PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_066050_dgqe.t1
Common NameSOVF_066050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 244aa    MW: 28010.3 Da    PI: 6.6105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_066050_dgqe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08555147
                       TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                       r  WT +  + +  av+ +  +     W +Ia++++  +t +++k+++q +
  Sp_066050_dgqe.t1  5 RSTWTWQQNKAFEVAVAIYSEDhseeKWGKIASEIPGYKTIEEIKHHYQLL 55
                       789*********************************899*********965 PP
2Myb_DNA-binding42.81.2e-1394139247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++W++ E+++++ + +++G+g+Wk+I+ ++  +R++ q+ s+ qky
  Sp_066050_dgqe.t1  94 QPWSENEHKQFLLGLHKYGKGDWKSISMEFVRTRSASQVASHAQKY 139
                        79*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.796156IPR017877Myb-like domain
SMARTSM007172.2E-4458IPR001005SANT/Myb domain
PfamPF002498.0E-6554IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-7663IPR009057Homeodomain-like
CDDcd001678.41E-4756No hitNo description
PROSITE profilePS5129415.33288144IPR017930Myb domain
SuperFamilySSF466891.08E-1391144IPR009057Homeodomain-like
SMARTSM007176.1E-1192142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-1092141IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1493143IPR006447Myb domain, plants
PfamPF002496.6E-1294139IPR001005SANT/Myb domain
CDDcd001672.16E-895140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MANSRSTWTW QQNKAFEVAV AIYSEDHSEE KWGKIASEIP GYKTIEEIKH HYQLLVGDVE  60
AIESGLVPLP PYTAATTAPH FADHKFMWEF RKGQPWSENE HKQFLLGLHK YGKGDWKSIS  120
MEFVRTRSAS QVASHAQKYF KRQTDKKKKK KDRKRWSIFD ITAPVDQGGS QNRGSSSLSS  180
KNDDHTRKGK ETEPAVINEV TFEEKDPMIA PAEYVLPQDS WSFEDDPSID FYAIDECLSQ  240
LPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13172173RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153KKKKKKDRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847077.10.0transcription factor SRM1-like
SwissprotQ9FNN65e-42SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9RJ370.0A0A0K9RJ37_SPIOL; Uncharacterized protein
STRINGXP_010666611.17e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-37MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]