PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_066580_wmtd.t1
Common NameSOVF_066580
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 337aa    MW: 37277.4 Da    PI: 6.5382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_066580_wmtd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18116166256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Sp_066580_wmtd.t1 116 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAETAAYAYDRAAYKLRGE 166
                        59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-21115175No hitNo description
SMARTSM003804.9E-34116179IPR001471AP2/ERF domain
PROSITE profilePS5103222.998116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-31116174IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22116173IPR016177DNA-binding domain
PfamPF008471.7E-12117166IPR001471AP2/ERF domain
PRINTSPR003676.4E-10117128IPR001471AP2/ERF domain
PRINTSPR003676.4E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEENYQTSSS FTTPIDIRDS VSALILTAGA NNTNTLDSIF SYYPCQPSNS LTTTNNINSL  60
LEPLGSSVYL KQRDLLQQFC LDNQSNKVGV YGSSSLSNQL FQNPSTTLNN PMKKKLYRGV  120
RQRHWGKWVA EIRLPQNRMR VWLGTYETAE TAAYAYDRAA YKLRGEYARL NFPNLKDGAT  180
KLGFGDSARM NAVKSAVDAK IQAICQKLKK ERANRIAKKK QKEATISESG GIKGGSGEEK  240
SNKSTTHSGD SNLNENDSLM NSYSSSSSFC STIVNDSGMV SPDISEEGWW SNGNGASPSS  300
DSFTSYPMMT DDFGFEDCSL EKMPSFDPEL IWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21115173160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846670.10.0ethylene-responsive transcription factor ERF061
TrEMBLA0A0K9RJ210.0A0A0K9RJ21_SPIOL; Uncharacterized protein
STRINGXP_010676304.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-53ERF family protein