PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_067030_krrh.t1
Common NameSOVF_067030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 283aa    MW: 31588.9 Da    PI: 9.35
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_067030_krrh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.7e-32135190258
          CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        ep+YVNaKQy++Il+RRq+Rakl +++kl +k+rkpylheSRh+hAl+R RgsgGrF
  Sp_067030_krrh.t1 135 EPIYVNAKQYHGILRRRQHRAKLVAQNKL-AKNRKPYLHESRHQHALKRTRGSGGRF 190
                        9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.0E-35132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.372133193IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27135190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-23136158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-23167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGVAAQRYQG AKLLDFSFQD QDSCSTQSTD QSNTSSASFG ENDLHTQTMS FAQSGYNTTH  60
GKHESGEYKF NFSTGTQNYT LPPLQTDYNH VFPQFAVTFP DQHFNSIVPT YAPQAVMMGI  120
MPTRVPLPLD FSASEPIYVN AKQYHGILRR RQHRAKLVAQ NKLAKNRKPY LHESRHQHAL  180
KRTRGSGGRF LNMKKLQESN PAVSGHKVSG RISHQLSGSK APGSEVHWQE NYANSTSTNS  240
CSEVTSTTST SDDIYHPLEF RFSGYSSAFG ETLQGGARME NYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19135195363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864979.10.0nuclear transcription factor Y subunit A-3-like
RefseqXP_021864983.10.0nuclear transcription factor Y subunit A-3-like
TrEMBLA0A0K9RH520.0A0A0K9RH52_SPIOL; Uncharacterized protein
STRINGXP_010685336.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-42nuclear factor Y, subunit A5