PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_067120_twyj.t1
Common NameSOVF_067120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 608aa    MW: 66965.7 Da    PI: 6.5313
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_067120_twyj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09495543348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +W+  E  +lvd+v+++G g+W+ I r       +Rt  ++k++w+++l
  Sp_067120_twyj.t1 495 AWSLTEVTKLVDGVAMFGAGRWSEIKRLSFssyAHRTSVDLKDKWRNLL 543
                        7***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.992488547IPR017930Myb domain
SuperFamilySSF466897.26E-15490549IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-11490547IPR009057Homeodomain-like
SMARTSM007174.1E-8492545IPR001005SANT/Myb domain
CDDcd116603.46E-17494544No hitNo description
PfamPF002495.6E-6495543IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MKMVVGVEEN EERAIKDVAA DTHSSGFAPL KQDSDPIVYK LVRVDFDGRF VPATDDELME  60
VEDLLEMEKS EMLSIPDVVE AASHIPDNDE LDESFEKPDI EKHEGLSQIK LAKVDQENLR  120
PQAEDSLPKS TSSSKDTHVK ESANMGEESS SSLHDGLNKN GSAGSRPNFS LTKGEIDLDK  180
LTIRELHETF RATFGRKTSV KDKMWLKRRI AMGLTNSCDV SVTSFIINNG KLLKKKELSN  240
NLDCGNSAAG EICSARNDGP VNLVVSNLRE DTIDDDELGN SFTESGCRSD DNLEHRAAKR  300
ARKPTKRYIE ESSDTEKESS GKSLSPSKRF GQDKASLKEA IRPAWGSYLG DFVTRPDSIG  360
GSGVQVPYVS RVRRCRPRKS ITALTKFNSS DVALNRKIVE SSVAEFKPPP DDHSRVELLE  420
TKSIQFGKLI VSEEERDKRC LTSKFSDGIS QAAEPKSVDS VDSTSLENAS GNNSDDHVTT  480
IPTVKGGMRR KHHRAWSLTE VTKLVDGVAM FGAGRWSEIK RLSFSSYAHR TSVDLKDKWR  540
NLLKASFANS QAEKGMNPRK NAPLPIPASV LVKVRELAEL NGQAPQVSKG SSNNNSGSSV  600
NENRSGYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372378RRCRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865087.10.0uncharacterized protein LOC110803852
RefseqXP_021865094.10.0uncharacterized protein LOC110803852
TrEMBLA0A0K9RJ000.0A0A0K9RJ00_SPIOL; Uncharacterized protein
STRINGXP_010685324.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-76TRF-like 6