PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_067720_upzk.t1
Common NameSOVF_067720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 375aa    MW: 43876.1 Da    PI: 7.2509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_067720_upzk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.1e-17597198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93
                       f k+++ +++ ++  l +pk++++++g++ ++s +++l+ ++g +W+vk+   k  +++ ltkGW++ v+   Lk g f++Fk+d+r s f  +
  Sp_067720_upzk.t1  5 FYKIMVCPSTQTKE-LKIPKEYVTKYGKQFAKS-DVKLQVSDGSVWRVKV--LKENDKVRLTKGWEKIVETYSLKYGNFLLFKFDKRdSMF--H 92
                       55777777777776.***********9998887.****************..999999**************************9876777..8 PP

                       EEEE- CS
                 B3 94 vkvfr 98
                       +++f+
  Sp_067720_upzk.t1 93 LTIFD 97
                       88887 PP
2B333.29e-11164241179
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                        f+ v+tp+ v+k  r+++p k+++eh ++   +++l+l+   + +++ vkl +  + ++  l++GWk Fv +n L++gD 
  Sp_067720_upzk.t1 164 FKLVMTPNTVSKGYRISVPIKHVREHLKP--WNRELILKAgGREKRFHVKLLMYPNNNQAPLGRGWKLFVWENALRVGDA 241
                        77899*********************644..4458999886788*******9999999999******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508509.9531340IPR020846Major facilitator superfamily domain
Gene3DG3DSA:2.40.330.101.5E-19398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-18499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.225499IPR003340B3 DNA binding domain
CDDcd100173.07E-16497No hitNo description
SMARTSM010193.7E-13599IPR003340B3 DNA binding domain
PfamPF023626.0E-14596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-14153241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-16158240IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-11162240No hitNo description
SMARTSM010190.074164262IPR003340B3 DNA binding domain
PfamPF023625.5E-9164241IPR003340B3 DNA binding domain
PROSITE profilePS508638.91164262IPR003340B3 DNA binding domain
PfamPF000837.4E-30241351IPR005828Major facilitator, sugar transporter-like
SuperFamilySSF1034734.05E-12249347IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.205.0E-6251346No hitNo description
PRINTSPR001711.1E-11253274IPR003663Sugar/inositol transporter
PRINTSPR001711.1E-11276288IPR003663Sugar/inositol transporter
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
METYFYKIMV CPSTQTKELK IPKEYVTKYG KQFAKSDVKL QVSDGSVWRV KVLKENDKVR  60
LTKGWEKIVE TYSLKYGNFL LFKFDKRDSM FHLTIFDPPG YEIEFDQQLV QISSESEQME  120
IDHITDYDDD IVSSDIYEEG DSVDLDEMNV RKRYEAFEPK NPHFKLVMTP NTVSKGYRIS  180
VPIKHVREHL KPWNRELILK AGGREKRFHV KLLMYPNNNQ APLGRGWKLF VWENALRVGD  240
ATNLPQWYAI VVVLFICIYV AGFAWSWGPL GWLVPSEIFP LEVRSAAQSI NVSVNMIFTF  300
IIAQAFLPML CALKFGLFIF FAFFVVIMTI FIYFLLPETK NVPIEEMNLV WKNHKFWGHF  360
IPEDVVTPEM PVLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6h7d_A4e-52252366391505Sugar transport protein 10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844735.11e-178B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0K9RH150.0A0A0K9RH15_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-14B3 family protein