PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_068890_kijg.t1

Common Name

SOVF_068890

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 362aa MW: 41235.8 Da PI: 6.6399

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_068890_kijg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.8e-11	79	112	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k++rr+++NReAAr+sR+RKka+i++Le +L Sp_068890_kijg.t1 79 KVQRRLAQNREAARKSRLRKKAYIQQLELSRSKL 112 89*************************9544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.6E-8	73	121	No hit	No description
SMART	SM00338	4.6E-6	75	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	77	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	79	121	No hit	No description
Pfam	PF00170	5.9E-8	79	113	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.0E-30	163	237	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MNSPTAQFVV SRRMNLYEPL HQISSWVDSF RDDGFPNVSP STVVEVNERL DSLSEDTSSH 60 GGQAPSNRYD QEASKPVEKV QRRLAQNREA ARKSRLRKKA YIQQLELSRS KLMQMEQELE 120 RVRQQGMYVG GGIDPVPFSA TVNSGIVAFE MEYGHWVEEQ NKQICELRNA LNTHITDVEL 180 RILVDGGMKH YFDLFQLKAG AAKADVFYLM SGMWKTSAER FFLWIGGFRP SELLKVLGPQ 240 LDPLTDQQVM DVYNLKQSCE QAEEALSQGM DKLQQTLAET VGTDRLGEGI YTSEMANNAI 300 EKLEALVSFV NQADHLRRET LQQMHRILTV RQAARGLLAL GEYFQRLRAL SSLWCSRPRQ 360 PT

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MNSPTAQFVV SRRMNLYEPL HQISSWVDSF RDDGFPNVSP STVVEVNERL DSLSEDTSSH  60
GGQAPSNRYD QEASKPVEKV QRRLAQNREA ARKSRLRKKA YIQQLELSRS KLMQMEQELE  120
RVRQQGMYVG GGIDPVPFSA TVNSGIVAFE MEYGHWVEEQ NKQICELRNA LNTHITDVEL  180
RILVDGGMKH YFDLFQLKAG AAKADVFYLM SGMWKTSAER FFLWIGGFRP SELLKVLGPQ  240
LDPLTDQQVM DVYNLKQSCE QAEEALSQGM DKLQQTLAET VGTDRLGEGI YTSEMANNAI  300
EKLEALVSFV NQADHLRRET LQQMHRILTV RQAARGLLAL GEYFQRLRAL SSLWCSRPRQ  360
PT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846364.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_021846365.1	0.0	transcription factor TGA4-like isoform X1
Swissprot	Q39162	1e-179	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0K9RI73	0.0	A0A0K9RI73_SPIOL; Uncharacterized protein
STRING	XP_010680601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]