PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_070430_ceyz.t1

Common Name

SOVF_070430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 687aa MW: 79146.4 Da PI: 6.2883

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_070430_ceyz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.7e-24	67	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk ++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel Sp_070430_ceyz.t1 67 EFYSNFARRNGFSIRKARSTESHNLG-VYRRDFVCYRSGFNQPRKKVNVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYVSQFSNVHNHEL 157 6*******************7777.**************************************998766789***********9 PP FAR1 90 a 90 Sp_070430_ceyz.t1 158 L 158 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	67	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-18	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.052	562	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-8	569	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-5	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MKPANNIWIQ KEQCPCGDWK CFIKYEVEEQ GEACQPTKDG ISSSSSSDAV FAPYVGQIFK 60 SDDEAFEFYS NFARRNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KVNVEHPRDR 120 KSVRCGCDAK LYLTKEIVNG VTQWYVSQFS NVHNHELLED DQVRLLPAYR KIQEADQERI 180 VLLSRAGFPV NRIINILELE KGVQPGQLPF IEKDIRNFLR TCKKTVQEND ALLTEKRVTD 240 MMELLEACKA MSERDVDFVF DFLTDANGKV ENIAWSYGDS VRAFNLFGDA VQFDITYQST 300 TYGMLLGLLS GIDNHGKPIF FACVLVQEEN PHAFVWAIQT VVQFMRGRHP QTIVTDLEPG 360 LRDTIATALP NTKHVISIWY IMSKLSSWFS LPLGLKYPEF KSEFEMVCYV ESMEDFEQLW 420 SLLITRFGLG SDKHISLLSS CRASWAFSYI KDCFVARITT AEYMKSIDSF LKGVLDEQTC 480 LQVFFEQVGL AVRLGCGAKE EMRFIHLKTC MPIEEHGQGI LTPYAFGVYQ HELVLSVQYA 540 VIEMAKGSYV ARHYKKVEGE CLLIWISEDE QIHCSCKGFE HSGILCRHAL RLLISKNYFH 600 LPDKYFPFRW RWDSSFIPMD QESSRPVKEE HYHALHSLTD TLVTESLVSK ERFNYAHKEL 660 TTLLDHVKNM AVDELTPEIS TNNFSES

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MKPANNIWIQ KEQCPCGDWK CFIKYEVEEQ GEACQPTKDG ISSSSSSDAV FAPYVGQIFK  60
SDDEAFEFYS NFARRNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KVNVEHPRDR  120
KSVRCGCDAK LYLTKEIVNG VTQWYVSQFS NVHNHELLED DQVRLLPAYR KIQEADQERI  180
VLLSRAGFPV NRIINILELE KGVQPGQLPF IEKDIRNFLR TCKKTVQEND ALLTEKRVTD  240
MMELLEACKA MSERDVDFVF DFLTDANGKV ENIAWSYGDS VRAFNLFGDA VQFDITYQST  300
TYGMLLGLLS GIDNHGKPIF FACVLVQEEN PHAFVWAIQT VVQFMRGRHP QTIVTDLEPG  360
LRDTIATALP NTKHVISIWY IMSKLSSWFS LPLGLKYPEF KSEFEMVCYV ESMEDFEQLW  420
SLLITRFGLG SDKHISLLSS CRASWAFSYI KDCFVARITT AEYMKSIDSF LKGVLDEQTC  480
LQVFFEQVGL AVRLGCGAKE EMRFIHLKTC MPIEEHGQGI LTPYAFGVYQ HELVLSVQYA  540
VIEMAKGSYV ARHYKKVEGE CLLIWISEDE QIHCSCKGFE HSGILCRHAL RLLISKNYFH  600
LPDKYFPFRW RWDSSFIPMD QESSRPVKEE HYHALHSLTD TLVTESLVSK ERFNYAHKEL  660
TTLLDHVKNM AVDELTPEIS TNNFSES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866735.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021866736.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021866737.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021866738.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021866740.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0K9RG50	0.0	A0A0K9RG50_SPIOL; Uncharacterized protein
STRING	XP_010689263.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]