PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_071040_wfjy.t1
Common NameSOVF_071040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 229aa    MW: 26153.5 Da    PI: 6.2525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_071040_wfjy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-16125174355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y GVr+++ +gr++AeIrdp+      r++lg++ ta eAa+a+++a+  ++g
  Sp_071040_wfjy.t1 125 YIGVRRRP-WGRFAAEIRDPTRK--GYRIWLGTYNTAIEAARAYDRAAFDIRG 174
                        88******.**********8542..3**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.6E-32124188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29124183IPR001471AP2/ERF domain
PROSITE profilePS5103222.708124182IPR001471AP2/ERF domain
CDDcd000184.47E-28125183No hitNo description
PRINTSPR003672.9E-11125136IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22125184IPR016177DNA-binding domain
PfamPF008477.8E-12125174IPR001471AP2/ERF domain
PRINTSPR003672.9E-11164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESLLAPDTA TALQLIENHL FDDQLHSRAS TLTTNDHLIS SKSSLFSGGS TTFNISFSTT  60
SISSTEGLCH DDTRDLLQYI YSSLNEESVD YDETFRIFSS QQLPQKVDER QNNNNNNNSN  120
SNGNYIGVRR RPWGRFAAEI RDPTRKGYRI WLGTYNTAIE AARAYDRAAF DIRGNKARLN  180
FPHEVESWSS SSKRRRTNDH EKVQQIGEKR QRVDDGGERE LLLESYCSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-241221841274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843242.11e-138ethylene-responsive transcription factor ERF098-like
TrEMBLA0A0K9RFZ31e-169A0A0K9RFZ3_SPIOL; Uncharacterized protein
STRINGXP_010673999.19e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-21ethylene responsive element binding factor 5