PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_071990_apnk.t2

Common Name

SOVF_071990

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NF-YC

Protein Properties

Length: 257aa MW: 27422.9 Da PI: 5.0143

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_071990_apnk.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.6	2.2e-54	41	145	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql+ fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdif Sp_071990_apnk.t2 41 QLNLFWSFQrqeIETANDFKNHSLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 132 7899999877789***************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivprde+k Sp_071990_apnk.t2 133 DFLVDIVPRDEIK 145 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.38E-33	26	135	IPR009072	Histone-fold
Pfam	PF00808	1.3E-20	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.3E-37	64	141	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEQQTPPPSQ PPPPPQQPPS TTGYPPQPGP YHHLLQQQQQ QLNLFWSFQR QEIETANDFK 60 NHSLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDEGCA VGLGGMGGMV GPTGVVGPPG VGVGPTASGV 180 PYYYPPMGQP APTGVMIGRP AMDVGMYGVA APQPPPSSAW QSVWQSGHAA TGDDGSYVSG 240 TSAGGGNSGQ GNLDGQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-55	49	141	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078729	4e-42	KM078729.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-D5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847561.1	0.0	nuclear transcription factor Y subunit C-1 isoform X2
Swissprot	Q9SMP0	1e-95	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A0K9RHH4	0.0	A0A0K9RHH4_SPIOL; Uncharacterized protein
STRING	XP_010695369.1	1e-108	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-77	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]