PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_072010_dtqg.t1

Common Name

SOVF_072010

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 161aa MW: 17861.4 Da PI: 9.4054

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_072010_dtqg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.4	6.4e-10	77	130	1	51
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtf...vCskegkreeekkkteke 51 +fY++YA GF +rks+++k+k++g + + f vC+k g++e++ +k+++ Sp_072010_dtqg.t1 77 EFYKAYAVASGFGIRKSTTTKTKKKGVVDQVAFkycVCNKAGFKEKRIQKAKDI 130 6**********************999888875557*******99883332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-7	77	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MEHQPVDYQD IYHNSTSIEE SGITNEQSSC SNVSVHVTPQ VVPLLTPGGT REWIPCPSPE 60 LRPTIGMIFE SVNVGIEFYK AYAVASGFGI RKSTTTKTKK KGVVDQVAFK YCVCNKAGFK 120 EKRIQKAKDI SKGKEGEAMK ISKGKEGETM EDQSKVIRTR K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856812.1	1e-56	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0K9RFQ9	1e-115	A0A0K9RFQ9_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010667127.1	2e-32	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-07	FAR1 family protein