PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_072110_mwiu.t1

Common Name

SOVF_072110

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 359aa MW: 39273.8 Da PI: 7.0574

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_072110_mwiu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.6e-06	144	164	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd C FaHg Sp_072110_mwiu.t1 144 ACSEFRK-GGCKKGDCCEFAHG 164 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0062	139	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.178	139	166	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	174	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.268	174	198	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMIGETRRHH QIDVPPWQES YNPISTTQIT SSASPPMQSS NGGGLSHLPN SPTYYDAVLA 60 SLRRYLMSDG TADNEPPSPV AAADYSGEVD FLSGDYDDDF FMYDFKIRKC TRARAHDWTE 120 CPFAHPGEKA RRRDPRKYSY SGTACSEFRK GGCKKGDCCE FAHGVFECWL HPNRFRTQAC 180 KDGPGCKRRV CFFAHTPDQL RAGSGLSSPR SGGLLSGYED GAMNSPNTVG DIVASLRNLQ 240 LNKVKSMPTS WGSHPIHGSS SPVFGSPRGV GAATAMSRAG FFSLPTTPTR PRVGYWDAHD 300 FGPEEEAPVM ERVESGRELR ARMFEKLSKE NPLDGSGSPL SASAPAPGPD FGWVCDLIE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMIGETRRHH QIDVPPWQES YNPISTTQIT SSASPPMQSS NGGGLSHLPN SPTYYDAVLA  60
SLRRYLMSDG TADNEPPSPV AAADYSGEVD FLSGDYDDDF FMYDFKIRKC TRARAHDWTE  120
CPFAHPGEKA RRRDPRKYSY SGTACSEFRK GGCKKGDCCE FAHGVFECWL HPNRFRTQAC  180
KDGPGCKRRV CFFAHTPDQL RAGSGLSSPR SGGLLSGYED GAMNSPNTVG DIVASLRNLQ  240
LNKVKSMPTS WGSHPIHGSS SPVFGSPRGV GAATAMSRAG FFSLPTTPTR PRVGYWDAHD  300
FGPEEEAPVM ERVESGRELR ARMFEKLSKE NPLDGSGSPL SASAPAPGPD FGWVCDLIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852534.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	2e-94	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A0K9RHJ2	0.0	A0A0K9RHJ2_SPIOL; Uncharacterized protein
STRING	XP_010688398.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	7e-86	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]