PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_073550_czdq.t1

Common Name

SOVF_073550

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 248aa MW: 27863 Da PI: 9.5721

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_073550_czdq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	87.6	1.1e-27	31	90	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +k+l+cprC+s +tk Cy nny+++q r+fC++C+ryW +GGa++ +P+ +gr k+k++s Sp_073550_czdq.t1 31 DKILSCPRCNSIETKSCYLNNYNVNQSRHFCRNCQRYWPTGGAIKKLPIRAGRCKSKHAS 90 7889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-19	27	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-21	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	22.853	34	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSENLEITSS VQQRTDKSQE ATKVAVMTKF DKILSCPRCN SIETKSCYLN NYNVNQSRHF 60 CRNCQRYWPT GGAIKKLPIR AGRCKSKHAS SYLRPVTTSS HKEFLFPFIS PTIPEVCIQN 120 ITIPLVPSTC IKRLSATYND CSGNTSTCPS LRKHSRDLNL QQDERNDKGL CLPKTLRIVI 180 DPVAAAKSCI WSTLGIKPPG QRDPVPDGCM FRAFQFRPEA NAETSQVFKV LEANPVALSR 240 SQLFRETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860753.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A0K9RF85	0.0	A0A0K9RF85_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-26	cycling DOF factor 2