PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_073850_ixmz.t1

Common Name

SOVF_073850

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 787aa MW: 85769.7 Da PI: 6.6123

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_073850_ixmz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.7e-13	535	575	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ E+e + ++++ G++ W++Ia+ ++ gRt++++k++w++ Sp_073850_ixmz.t1 535 FSQAEEETIMKLHAVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 575 899**************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01490	5.3E-99	29	458	IPR013057	Amino acid transporter, transmembrane domain
Pfam	PF01490	1.2E-18	460	535	IPR013057	Amino acid transporter, transmembrane domain
PROSITE profile	PS51294	18.792	527	581	IPR017930	Myb domain
SMART	SM00717	3.6E-10	531	579	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.5E-12	534	582	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-19	534	578	IPR009057	Homeodomain-like
CDD	cd00167	2.77E-9	535	577	No hit	No description
Pfam	PF00249	8.2E-12	535	575	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MAKTSTLEIY ASASASTSPY DSDEDATKRT GTVWTGVAHI ITAVIGSGVL SLAWSTSQLG 60 WIAGPVSLLC FAFVTYLSAS LLSDCYRSPN PVTGSRNSSY MDAVKAILGR KQVWFCGCLQ 120 YLSLYGAGVA YVITTATSIR AIRKSNCYHK EGHQATCSYG DGVYMLLFGC VQIIMSQIPD 180 FHNMKWLSIL AAIMSFAYAT IGLALGFATV IGNRAIKGSI TGVQATSSFK KMSLSFQAIG 240 DIAFAYPYAI IVLEIQDTMK SPPAENLTMK KASMVAVLIT TFFYLSCGCF GYAAFGNDTP 300 GNILTGFGFY EPYWLIDFAN ACIVVHLVGG YQVYSQPVFA FVEGWFAKKF PNSKFVNDFH 360 SVKLPLLCSD LKVNLLRVCF RTAYVASTTG IAMIFPFFNQ VLGLLGAISF WPLAIYFPVE 420 MYIVQKNMNV WTKQGILLRT ISGFCLLVSI VALVGSIEGI DTLKSPPSEN ETMKKASTIS 480 VAVTTLFYLL CGGFGYAAFG DDTPGNLMTG FYEPYWLIGL ANVCIVLHLV GGYQFSQAEE 540 ETIMKLHAVV GNRWSLIAAQ LPGRTDNDVK NHWNTKLKKK LTGMGIDPVT HKSFSHLMAE 600 IATTLGPPQV ANLTEAALGC FKDEMLHLLT KKRVDFQLQP TSSQGGNMNS AYGMNNTKPD 660 TKEDTVEKIK LGLSRAIQQQ PDMILSNKPW ELETTNVGAT QTHVNGGCNA FTAFQYGQSA 720 FVAEEDGSPW NQSMCSTAGD QLGHLKLEDE NGEESEGGKE IRNGSSLFST DSILWDLPSD 780 DLMNPMV

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MAKTSTLEIY ASASASTSPY DSDEDATKRT GTVWTGVAHI ITAVIGSGVL SLAWSTSQLG  60
WIAGPVSLLC FAFVTYLSAS LLSDCYRSPN PVTGSRNSSY MDAVKAILGR KQVWFCGCLQ  120
YLSLYGAGVA YVITTATSIR AIRKSNCYHK EGHQATCSYG DGVYMLLFGC VQIIMSQIPD  180
FHNMKWLSIL AAIMSFAYAT IGLALGFATV IGNRAIKGSI TGVQATSSFK KMSLSFQAIG  240
DIAFAYPYAI IVLEIQDTMK SPPAENLTMK KASMVAVLIT TFFYLSCGCF GYAAFGNDTP  300
GNILTGFGFY EPYWLIDFAN ACIVVHLVGG YQVYSQPVFA FVEGWFAKKF PNSKFVNDFH  360
SVKLPLLCSD LKVNLLRVCF RTAYVASTTG IAMIFPFFNQ VLGLLGAISF WPLAIYFPVE  420
MYIVQKNMNV WTKQGILLRT ISGFCLLVSI VALVGSIEGI DTLKSPPSEN ETMKKASTIS  480
VAVTTLFYLL CGGFGYAAFG DDTPGNLMTG FYEPYWLIGL ANVCIVLHLV GGYQFSQAEE  540
ETIMKLHAVV GNRWSLIAAQ LPGRTDNDVK NHWNTKLKKK LTGMGIDPVT HKSFSHLMAE  600
IATTLGPPQV ANLTEAALGC FKDEMLHLLT KKRVDFQLQP TSSQGGNMNS AYGMNNTKPD  660
TKEDTVEKIK LGLSRAIQQQ PDMILSNKPW ELETTNVGAT QTHVNGGCNA FTAFQYGQSA  720
FVAEEDGSPW NQSMCSTAGD QLGHLKLEDE NGEESEGGKE IRNGSSLFST DSILWDLPSD  780
DLMNPMV

Functional Description ? help Back to Top
Source	Description
UniProt	Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841880.1	0.0	probable amino acid permease 7
Swissprot	Q9FF99	1e-179	AAP7_ARATH; Probable amino acid permease 7
TrEMBL	A0A0K9RF51	0.0	A0A0K9RF51_SPIOL; Uncharacterized protein
STRING	XP_010676125.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-54	myb domain protein 103

Publications ? help Back to Top
Okumoto S, et al. High affinity amino acid transporters specifically expressed in xylem parenchyma and developing seeds of Arabidopsis. J. Biol. Chem., 2002. 277(47): p. 45338-46 [PMID:12244056] Lee YH,Tegeder M Selective expression of a novel high-affinity transport system for acidic and neutral amino acids in the tapetum cells of Arabidopsis flowers. Plant J., 2004. 40(1): p. 60-74 [PMID:15361141] Tegeder M,Ward JM Molecular Evolution of Plant AAP and LHT Amino Acid Transporters. Front Plant Sci, 2012. 3: p. 21 [PMID:22645574] Elashry A, et al. The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiol. Biochem., 2013. 70: p. 379-86 [PMID:23831821] Fischer WN,Kwart M,Hummel S,Frommer WB Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis. J. Biol. Chem., 1995. 270(27): p. 16315-20 [PMID:7608199]