PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_073880_rpet.t2
Common NameSOVF_073880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 509aa    MW: 57178.2 Da    PI: 6.0751
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_073880_rpet.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-16175263197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp+kf++eh   ++++ t++l de g++++  +  rk++    l++GW++F   + L egD+++F+l+  ++f  
  Sp_073880_rpet.t2 175 FVKSMLKSHVTGGFWLGLPRKFCDEHL--PNCDCTIVLVDEAGKEFNTVYLARKTG----LSGGWRGFSIYHTLLEGDVLIFHLIAPMKF-- 258
                        89************************7..45888****************656665....************************998999.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        ++ ++
  Sp_073880_rpet.t2 259 KIYII 263
                        66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-19169264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-23170264IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-25173264No hitNo description
PROSITE profilePS5086311.533175266IPR003340B3 DNA binding domain
PfamPF023623.9E-14175264IPR003340B3 DNA binding domain
SMARTSM010197.1E-20175266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MKNSAISKAE LKMELVTRRL AMLQAHHHDI VPVLSEVNPI RVISNAESHP LQCESAKPFM  60
DTSDDTLSEE VLIPKSSKNR ITSESHKRAR VISDDESSED EEHMVTIPPR KKGRTKQERI  120
KMNDSSNSKN VKGIDNPTRR KIMDLTEPSS MGDKSSSMKR AEEIQANLAA ENPSFVKSML  180
KSHVTGGFWL GLPRKFCDEH LPNCDCTIVL VDEAGKEFNT VYLARKTGLS GGWRGFSIYH  240
TLLEGDVLIF HLIAPMKFKI YIIRDQNFGE VDGALGLLNL ELGVCEQKSD DLTQRVLQIE  300
DNYTSVDHLS QSSSDLDLGS EVLDGICFAH SSINFEGVNS FKNFNIVVDG RIIDSKFSDS  360
TRQKYYELCC SQKSFLHEHI LKGFNCHLVV GIISETINIS DGIRSYKAGS ISHEDLQIWE  420
KTLRGFEVLG MKVEFLCARI NKLLGHVVES DAADESNMLK ESMIKRAIVG ERMKALENKL  480
TQLKETMEKI DLEMDAEITD NGKCMKTEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114PRKKGRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847234.10.0B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A0K9RF490.0A0A0K9RF49_SPIOL; Uncharacterized protein
STRINGXP_010688081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-40B3 family protein