PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_074070_imfa.t2

Common Name

SOVF_074070

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LSD

Protein Properties

Length: 252aa MW: 28109.9 Da PI: 4.3583

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_074070_imfa.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.7	1.9e-13	163	187	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+tV Sp_074070_imfa.t2 163 CGSCRHLLSYPQGAKHVQCSCCQTV 187 ************************9 PP
2	zf-LSD1	36.4	8.7e-12	201	225	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+YP+GA sVRC +C V Sp_074070_imfa.t2 201 CGNCQLLLMYPYGAQSVRCFSCSSV 225 **********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.0E-16	160	190	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.0E-11	163	187	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.1E-8	198	225	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-10	201	225	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDEEIGDTLL TEVQHHSPLP PPPQEQPREV EKEQLKEEGD TPQTEKQHHS TSLSPPPSPP 60 TPQEQPKGEE NEQPQLKEEE TEQLQSKEED GKENHKENDC GGEQVEIEEG EVSKSNEPGK 120 EHEKMEELVG NDEEEGPPPG WDALPSPPPL PPSSQPERGQ MVCGSCRHLL SYPQGAKHVQ 180 CSCCQTVNYV LEEHEVGQVK CGNCQLLLMY PYGAQSVRCF SCSSVIYIGD HNRRPPLSVQ 240 QSQACRPFSI SH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861908.1	1e-180	protein LOL2-like isoform X2
TrEMBL	A0A0K9RGW5	1e-179	A0A0K9RGW5_SPIOL; Uncharacterized protein
STRING	XP_010686668.1	1e-60	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-37	lsd one like 2