PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_074230_ddta.t1
Common NameSOVF_074230
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 315aa    MW: 34787.4 Da    PI: 8.0717
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_074230_ddta.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.78.1e-33165221158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep++VNaKQy++Il+RRq+Rak+e+++kl +k+rkpylheSRh hAl+R Rg+gGrF
  Sp_074230_ddta.t1 165 DEPIFVNAKQYHGILRRRQSRAKMEAQNKL-IKARKPYLHESRHLHALNRVRGTGGRF 221
                        79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-37163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.689164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.2E-27166221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-23167189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-23198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSNLYVNFPP HWNSNNQHIS ESVSKGLSLK VDSPPQLHLN GMSLGFHLHD DDSPSSQSTQ  60
SNHDLTANAG TNSQDQCMSS ESGQEVSCGQ NLGQMKPIYL MGHPETAYGT GQIDYSHAMG  120
CMPYPYGDPY YNGLMTAYGP TPIIQPHMMG MTTTRVPLPL DISEDEPIFV NAKQYHGILR  180
RRQSRAKMEA QNKLIKARKP YLHESRHLHA LNRVRGTGGR FLSTKKQQQQ SSNSTSATNE  240
NYSISSSSNA FARNGNNNMV FEPHHQSQQC MATGSSNNGF FQQQDSSGFL GISSSQHNGG  300
FITNNPNQHQ APVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20165227264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867019.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_021867020.10.0nuclear transcription factor Y subunit A-7-like
TrEMBLA0A0K9RF320.0A0A0K9RF32_SPIOL; Uncharacterized protein
STRINGXP_010666451.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.44e-44nuclear factor Y, subunit A8