PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_074520_sjsc.t1

Common Name

SOVF_074520

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 298aa MW: 33766 Da PI: 4.2261

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_074520_sjsc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.7	9.5e-20	19	85	34	100
DUF260 34 hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lFG+sn++k++++l++ ++++am++++y+++ara+dPv G++++i++l++q++ kael+l+ ++ Sp_074520_sjsc.t1 19 ERLFGVSNITKIIRNLNPPDKDIAMRTIIYQSDARAKDPVGGCYRIIRELHHQISYCKAELDLVLQQ 85 79***********************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.989	1	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-16	19	82	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEEEARKVVV VVVEPRSEER LFGVSNITKI IRNLNPPDKD IAMRTIIYQS DARAKDPVGG 60 CYRIIRELHH QISYCKAELD LVLQQLELCK AQVYQQQHHA QLYQMATGLA NQSLEATDTQ 120 VEAVEATTTP VGDLNNNNNN INNQGSEIVT TCDNDSYQQY QALMRCYYYD EADNQGNNEQ 180 QQYIPISDQQ HHVQDQNDQY SWVAPPPNDD AVLASSNSST SHGECFVMKN EYGVGECDGL 240 EIKQQQIQIV ENGVPYDDEK EYGTKFDDSS THVDLSCCDL QGDGLKFDHQ QTTELRFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021754529.1	1e-145	LOB domain-containing protein 27-like
TrEMBL	A0A0K9REV7	0.0	A0A0K9REV7_SPIOL; Uncharacterized protein
STRING	XP_010686136.1	1e-47	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-28	LOB domain-containing protein 22