PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_074780_azie.t1
Common NameSOVF_074780
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 401aa    MW: 46228.1 Da    PI: 7.6526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_074780_azie.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-1325117198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffkv    ++  ++ + +p  f e+ ++k   ++++ l+ +     +Wev+l++ ++  + v ++GW++F+ a  L+e+D++vFk++++s f
  Sp_074780_azie.t1  25 FFKVN--LHADFRSGVEIPLYFSENVKKK--LPQKVALKGPGVdfDTWEVQLKMHNNATW-VVGEGWEDFAAAFSLEENDTLVFKYKNNSYF 111
                        66666..5566666799*****9766644..78899999976677*******88888877.5688*********************998999 PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                          +v++f+
  Sp_074780_azie.t1 112 --KVRIFS 117
                        ..999887 PP
2B340.35.8e-132963761087
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl...iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        ++k+  l +pk+  +e  ++k +++ l+l+ + + +++ +l   +y+++ ++  +t+GWk+Fv++n L++ D +vF+l + 
  Sp_074780_azie.t1 296 SGKTVKLGIPKQWWTEVIKSKGSPTHLRLRVKGNDEYDPRLygcRYDNSNCSGRITTGWKKFVEDNSLCQHDCCVFSLAEP 376
                        44556799******9*9778889999****999999998884445588888899***********************8654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1523117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95723119IPR003340B3 DNA binding domain
CDDcd100176.03E-1425117No hitNo description
Gene3DG3DSA:2.40.330.105.3E-1625117IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-1325119IPR003340B3 DNA binding domain
PfamPF023622.2E-1125117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-11282375IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-9284392No hitNo description
SuperFamilySSF1019362.75E-11284376IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0049286382IPR003340B3 DNA binding domain
PROSITE profilePS508638.148287390IPR003340B3 DNA binding domain
PfamPF023625.2E-10293380IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLGGEGSNNA RTREENMYWR SFTPFFKVNL HADFRSGVEI PLYFSENVKK KLPQKVALKG  60
PGVDFDTWEV QLKMHNNATW VVGEGWEDFA AAFSLEENDT LVFKYKNNSY FKVRIFSGKT  120
SCERESSHFV IKSVSQQTKE SRSKVEKPCT VKKQETEIGL AISGSEREKK INDDQESILR  180
ESVEKTVLIE VDDDSDDDAP TSTRIFKRKV DSGICNKSSK ETKLAFQRAV KPKIETEGEY  240
ISPLRGPPEC NQEKEREIQR ASQRLKEIRK TWQQAKETQR FTEKSFCVSL SRTHVSGKTV  300
KLGIPKQWWT EVIKSKGSPT HLRLRVKGND EYDPRLYGCR YDNSNCSGRI TTGWKKFVED  360
NSLCQHDCCV FSLAEPFEDN NEIVYLEVEI IRVITLYEDS D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840385.10.0B3 domain-containing protein REM16-like
TrEMBLA0A0K9RET40.0A0A0K9RET4_SPIOL; Uncharacterized protein
STRINGXP_010677478.11e-131(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein