PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_075240_tnxn.t1
Common NameSOVF_075240
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 181aa    MW: 20459.6 Da    PI: 5.2236
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_075240_tnxn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.91.8e-123074448
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
                       +++ +r+++NRe+ArrsR RK++ ie L   +++L+ eN +  ++
  Sp_075240_tnxn.t1 30 DRKRKRMASNRESARRSRMRKQKHIEDLMAQADQLKRENNQILQT 74
                       7899***********************************977655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-172791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4732992IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-92976No hitNo description
PfamPF001701.2E-93176IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-113183No hitNo description
CDDcd147025.49E-193282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSSGNSTT SSQLQNSGSE GDLQVMMVDD RKRKRMASNR ESARRSRMRK QKHIEDLMAQ  60
ADQLKRENNQ ILQTTNVTTQ QFVNVEAENS ILKAQMNELS QRLQSLNDIL NYINTLNAGV  120
NSVVGATNSF ELEDDSLDIM GDFGFMNGYY GNFTHNNNHN NPWNLVYLNQ PIMASADVLQ  180
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMASNRESARRSRMRKQK
24350RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852046.11e-131bZIP transcription factor 11-like
TrEMBLA0A0K9REL11e-130A0A0K9REL1_SPIOL; Uncharacterized protein
STRINGXP_010672920.14e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.12e-30basic leucine-zipper 2