PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_078440_uafi.t1

Common Name

SOVF_078440

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

BES1

Protein Properties

Length: 701aa MW: 79011.1 Da PI: 5.3391

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_078440_uafi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	134.6	1e-41	75	209	3	130
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 ++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +s+ +++ s a p+s++ Sp_078440_uafi.t1 75 AKRPRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSQSQDS-RPSGEPSIPAAVPSSQM 165 678899**************************************************************555554.44444444444454444 PP DUF822 95 q.sslkssalaspvesys.......aspksssfpspssldsisl 130 +++ s +++ ++ y+ +++k +s+p s +d s+ Sp_078440_uafi.t1 166 LpQQTLSASFKGVCPGYQnsveydtCQMKGVSVPTASPYDVSSS 209 44455555555555555500000005555555555555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-37	77	209	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.35E-172	258	697	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.7E-189	261	696	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.2E-99	267	685	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	298	312	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	319	337	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	341	362	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.3E-6	424	433	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.4E-63	434	456	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	507	526	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	541	557	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	558	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.4E-63	576	599	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.3E-6	579	589	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.4E-63	616	638	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.3E-6	667	681	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	7.3E-6	682	696	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MNVATDMQKL IRSSEGDEEE EMDMDAQEED DDEEGKNMAA AMMVNMDGGI ATSSDSQFQY 60 HPQIQEEANS QGGVAKRPRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN 120 DVIAALAREA GWVVLPDGTT FPSQSQDSRP SGEPSIPAAV PSSQMLPQQT LSASFKGVCP 180 GYQNSVEYDT CQMKGVSVPT ASPYDVSSSP HSHASSTVGS RGERIDNHLH ISSSVDIVAN 240 KQVVDSVDPS SRLHEHDFAG TPYIPVYVML PLGVINMKCE LTDPDGVLKQ LRILKSISVD 300 GVKVDCWWGI VEAHAPQEYN WNGYKRLFQI VKDLKLKLQV VMSFHECGGN FRDDVCIPLP 360 LWVTEIGRSN PDIYFTDKEG RRNSECLSWG IDKERVLKGR AAFEVYFDFM RSFRIEFDEF 420 FEDGIISMVE VGLGPCGDLR YPSFPVKHGW RYPGLGEFQC YDQYMLKSLQ KAAEARGHSF 480 WAKGPTNAGF YNSQPYETGF FCNGGEYEGY YGRFFLKWYS QVLVEHGDRI LSLAKLAFEG 540 TCIAAKLSGI HWWYKTDSHA AELTAGFYNP CNRDGYAAMM SMLKKHGAAL TFTPAEVDLL 600 DQLENSSEPL ADPEGLAWQV LNAAWDVCIP VSSENYVPCH SREVYNKMLE NAKPFNDPDG 660 RHLLSFTYHR LSLQLMERHN LMEFERFVKK MHGEAVLDPQ I

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MNVATDMQKL IRSSEGDEEE EMDMDAQEED DDEEGKNMAA AMMVNMDGGI ATSSDSQFQY  60
HPQIQEEANS QGGVAKRPRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSQSQDSRP SGEPSIPAAV PSSQMLPQQT LSASFKGVCP  180
GYQNSVEYDT CQMKGVSVPT ASPYDVSSSP HSHASSTVGS RGERIDNHLH ISSSVDIVAN  240
KQVVDSVDPS SRLHEHDFAG TPYIPVYVML PLGVINMKCE LTDPDGVLKQ LRILKSISVD  300
GVKVDCWWGI VEAHAPQEYN WNGYKRLFQI VKDLKLKLQV VMSFHECGGN FRDDVCIPLP  360
LWVTEIGRSN PDIYFTDKEG RRNSECLSWG IDKERVLKGR AAFEVYFDFM RSFRIEFDEF  420
FEDGIISMVE VGLGPCGDLR YPSFPVKHGW RYPGLGEFQC YDQYMLKSLQ KAAEARGHSF  480
WAKGPTNAGF YNSQPYETGF FCNGGEYEGY YGRFFLKWYS QVLVEHGDRI LSLAKLAFEG  540
TCIAAKLSGI HWWYKTDSHA AELTAGFYNP CNRDGYAAMM SMLKKHGAAL TFTPAEVDLL  600
DQLENSSEPL ADPEGLAWQV LNAAWDVCIP VSSENYVPCH SREVYNKMLE NAKPFNDPDG  660
RHLLSFTYHR LSLQLMERHN LMEFERFVKK MHGEAVLDPQ I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6g_A	1e-141	263	694	11	444	beta-amylase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849858.1	0.0	beta-amylase 7 isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0K9RFM4	0.0	A0A0K9RFM4_SPIOL; Beta-amylase
STRING	XP_010670436.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]