PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_080370_rfri.t1
Common NameSOVF_080370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 285aa    MW: 30585.3 Da    PI: 6.5768
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_080370_rfri.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.37.9e-314107199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C++dC ++p++      ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+ql
  Sp_080370_rfri.t1   4 SCNGCRVLRKGCSDDCSIRPCLqwiksSESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGQWQL 95 
                        6*********************9999777899************************************************************ PP

             DUF260  88 eqlkaelallke 99 
                        +q + e++l+++
  Sp_080370_rfri.t1  96 CQNAIEAVLRGA 107
                        ****99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.6E-891278IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7763109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLQWIKS SESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQNAI EAVLRGAPIT PIPTEAAANP  120
PPIQGAYDIR HVSKDDHANS NSSAALHRVK PTRTRFKRVG SKPKPAKAEE GAAAAATSAL  180
QMMAVAAAAT ESTRHDSAEL NGSSTSHDST VSHPDDHTST THTSLFSTDV TVEEKESGDH  240
GDDGEVELEL TLGFGFDSVV RPESLSRKVG QEHDQVVCEM GLGLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838468.10.0LOB domain-containing protein 40-like
SwissprotQ9M8867e-81LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9REJ10.0A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGXP_010693111.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-74LOB domain-containing protein 41