PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_083410_cjdw.t1

Common Name

SOVF_083410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NF-YC

Protein Properties

Length: 288aa MW: 31824.3 Da PI: 4.6967

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_083410_cjdw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.4	8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ ++ + +fdfl d+v + Sp_083410_cjdw.t1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKHCIHSFSMFDFLKDVVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.37E-20	3	89	IPR009072	Histone-fold
Pfam	PF00808	1.7E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSSLHLKHC IHSFSMFDFL KDVVSKVPDY GNSDANADDR TATKRRKSAV DEYHDSDEEL 120 KKSRMQEMSH ASGSGRGRGR GRGRGRGRGR PPLEREAVSH HEMDAEPSTT FEPMNKPCPI 180 QVPNTDDDPN NKLDPMKESP VVGDGGDTAI RNFDLNAEVA ADNQEMVPTV TAAAAAAAAE 240 NDVASVEQPP PESKNDELVS EVDGMAIDPH QIAQFNSRID EDEDYDEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851404.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	A0A0K9RC39	0.0	A0A0K9RC39_SPIOL; Uncharacterized protein
STRING	XP_010670583.1	1e-152	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-67	nuclear factor Y, subunit C11