PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_084160_osow.t1
Common NameSOVF_084160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 198aa    MW: 20699.1 Da    PI: 8.0288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_084160_osow.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-193484256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr ++ +gr++AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g+
  Sp_084160_osow.t1 34 KYRGVRKRP-WGRYAAEIRDPI----KkTRVWLGTFNTAEDAARAYDAAAREFRGA 84
                       8********.**********72....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.4853491IPR001471AP2/ERF domain
PfamPF008473.8E-133483IPR001471AP2/ERF domain
SMARTSM003802.2E-353497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-313491IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-223491IPR016177DNA-binding domain
CDDcd000181.30E-183490No hitNo description
PRINTSPR003673.3E-113546IPR001471AP2/ERF domain
PRINTSPR003673.3E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAPKQINNNN NNAANPTPAA VSSAAAASAA IEIKYRGVRK RPWGRYAAEI RDPIKKTRVW  60
LGTFNTAEDA ARAYDAAARE FRGAKARTNF HYFDQQCPSS GDSTTIDSIG ACIDAPPPPP  120
PPPIVIPGGD GVGGSYVMYG VLANRVSGMR ESFGCGRVMG RNGGAGIQSE EAAVDSGDGG  180
RGLVPDLDLN LAPPQEVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-193590662ATERF1
3gcc_A3e-193590662ATERF1
5wx9_A4e-1934901471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844919.11e-142ethylene-responsive transcription factor 8
TrEMBLA0A0K9RDB01e-141A0A0K9RDB0_SPIOL; Uncharacterized protein
STRINGXP_010675550.11e-56(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.14e-26ethylene response factor 8