PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_086720_jmtc.t1

Common Name

SOVF_086720

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 517aa MW: 57601.5 Da PI: 8.6478

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_086720_jmtc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	210	242	4	36
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 k rr+++NReAAr+sR+RKka++++Le Sp_086720_jmtc.t1 210 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRI 242 6889************************97544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.3E-6	207	286	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-7	209	253	No hit	No description
PROSITE profile	PS50217	9.14	209	253	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	210	249	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.51E-21	211	257	No hit	No description
SuperFamily	SSF57959	2.0E-6	211	253	No hit	No description
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.7E-31	294	369	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MASSHRLGET GLSQSGPSSN HHNIPFAIPP HHHHHHHHLH GINPNTTTNP FMNQGGPSFD 60 FGELEQAIVL QGVKIGHHDQ PKPSLFTNGS RPAATLEMFP SWPMRIQQTT RGSCSKSGGE 120 STDDSGSGIN TLSSSQADTH LEQPESPISR NQQQQQQHQH LQGGSFQQQQ QPVMATDSSN 180 RTGLSQNPSA LKQPQEKRHG GTKSNKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS 240 RIKLAQLEQD LQRARAQGFF MGGGGAGGAP SNMSSGAAIF DMEYARWLED DHRHTSELRG 300 ALHAHLSDGD LRIIVDAYIN HYDDIFRLKG VAAKSDIFHL ITGMWTTPAE RCFLWMGGFR 360 PSELIKMLTA QLDPLTEQQL MGIYSLQHSS QQAEEALTQG LDQLQQSLVD TIATSTVTDG 420 MHQMAIALGK LSNLEGFIRQ ADNLRQQTLH QLRRILTIRQ AARCFLVIGE YYGRLRALSS 480 LWASRPREHM MNNDNSCQTA PDMQMVQPPH HNHFSPF

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MASSHRLGET GLSQSGPSSN HHNIPFAIPP HHHHHHHHLH GINPNTTTNP FMNQGGPSFD  60
FGELEQAIVL QGVKIGHHDQ PKPSLFTNGS RPAATLEMFP SWPMRIQQTT RGSCSKSGGE  120
STDDSGSGIN TLSSSQADTH LEQPESPISR NQQQQQQHQH LQGGSFQQQQ QPVMATDSSN  180
RTGLSQNPSA LKQPQEKRHG GTKSNKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS  240
RIKLAQLEQD LQRARAQGFF MGGGGAGGAP SNMSSGAAIF DMEYARWLED DHRHTSELRG  300
ALHAHLSDGD LRIIVDAYIN HYDDIFRLKG VAAKSDIFHL ITGMWTTPAE RCFLWMGGFR  360
PSELIKMLTA QLDPLTEQQL MGIYSLQHSS QQAEEALTQG LDQLQQSLVD TIATSTVTDG  420
MHQMAIALGK LSNLEGFIRQ ADNLRQQTLH QLRRILTIRQ AARCFLVIGE YYGRLRALSS  480
LWASRPREHM MNNDNSCQTA PDMQMVQPPH HNHFSPF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858653.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0K9RCX9	0.0	A0A0K9RCX9_SPIOL; Uncharacterized protein
STRING	XP_010686011.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]