PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_088090_kojk.t1
Common NameSOVF_088090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 355aa    MW: 40772.8 Da    PI: 6.8972
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_088090_kojk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix621.4e-1959147286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W+++e+l Li+a++e++ +l+rg+lk+ +Weev+  + ++ g+   ++s +qC++k+e+l+kry+++k+    + + + + + yf+ ++
  Sp_088090_kojk.t1  59 WSHEETLNLIKAYQEKWYSLKRGQLKASQWEEVAVTVaARCGLddpSKSGTQCRHKIEKLRKRYRAEKQKLAPNFNYHNHPWIYFSLMD 147
                        *********************************999964556555589************************99999999999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.72558119IPR017877Myb-like domain
PfamPF138372.5E-1858149No hitNo description
SMARTSM005954.6E-866154IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSPPQPQPQ TPPSPPTPTA ATTTTTTTTE TPTPPPPQPP PIIQALSYSP LKKPQPIPWS  60
HEETLNLIKA YQEKWYSLKR GQLKASQWEE VAVTVAARCG LDDPSKSGTQ CRHKIEKLRK  120
RYRAEKQKLA PNFNYHNHPW IYFSLMDQLE RGPLPISAVA PPNNNNYNIN HNINNNNNND  180
LIDSDDEEVG VRFASLGKLR GENSNLRDGF FKSGKFGNGY RRGSEFEGGN LRNLRDLKKR  240
KSYWEGDEDE QYQEQEVGYG MEEEEEEEEI VEEREKGGNL MGELAAQMRG FAESFVRIEK  300
KKVELMRENQ RLRIEMENKK KEMVLVYQHK TIELINKAFH DAVSSEKKMK MSPDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854024.10.0trihelix transcription factor ASIL2, partial
TrEMBLA0A0K9RCJ70.0A0A0K9RCJ7_SPIOL; Uncharacterized protein
STRINGXP_010685013.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-28Trihelix family protein