PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_088370_mfhx.t1
Common NameSOVF_088370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 411aa    MW: 46631.4 Da    PI: 4.3056
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_088370_mfhx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.5e-16162252186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrts....essstcpyfdqle 86 
                        +Wt++e+ aL++a  e+  rl+r++l+   W+ev++k+ +e+ +er+  qC+++++ l+k+ykk++++   ++s    +  s+++++++++
  Sp_088370_mfhx.t1 162 EWTERETFALLDAWGERFLRLGRKSLRSEEWKEVAEKVsQETDIERTNAQCRNRLDTLKKKYKKENTRLTAGASggggGGGSKWVFYRRMD 252
                        5*************************************88999***********************9998876411114568999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-5113123IPR009057Homeodomain-like
PROSITE profilePS500906.609161220IPR017877Myb-like domain
PfamPF138372.2E-22162254No hitNo description
Gene3DG3DSA:1.10.10.608.3E-5188228IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDDEENNSRY IPKAYDLNNQ QEYGSSLHPK VSGYDATYPG NEEEDLEDEE LGEEEVETNG  60
VRMLGKDIYG DEEEDEDDSD DDEEEEEDND EHDDGKSFNV KVEDNGNERP QKKRKLRTLV  120
SNYEFAPRLP TPTPTPTLTP NPNPNPTPTV RKAVSGQNSV GEWTERETFA LLDAWGERFL  180
RLGRKSLRSE EWKEVAEKVS QETDIERTNA QCRNRLDTLK KKYKKENTRL TAGASGGGGG  240
GGSKWVFYRR MDMLMSSPPK QQTRTGLSCG IDSGEYVFMN PNVYLNHANG LDEMRDSPGN  300
SDSDDSGGFP PKGSKNNNKG RRAFDGSSVK LLADSIEKFS EIYEKIESNK RKQMTELENM  360
RMDFQRQLET QRREILERAQ AEIAKIRQGD DNDSDNDDDN ENDLSAENLS G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848104.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A0K9RAI10.0A0A0K9RAI1_SPIOL; Uncharacterized protein
STRINGXP_010691286.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-68Trihelix family protein