PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_089860_ynay.t1
Common NameSOVF_089860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 231aa    MW: 26450.5 Da    PI: 7.7943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_089860_ynay.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014668123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  Sp_089860_ynay.t1 46 YSCNFCRREFRSAQALGGHMNVH 68
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-64373No hitNo description
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEEGRCWMVT KNRASSKCGE ETWEEKAFAE DAAGMLGGCV WPPRSYSCNF CRREFRSAQA  60
LGGHMNVHRR DRARLKQFSS SQHPDPHPRH RIPSYKSSLS LSSHKEEDDA IIDTNPNTFC  120
SLHPESELVS SFWTNRDKNV SLFCLHSDEL TKDLPLKISK NHERPRSVIS LSNDSATYED  180
NKDVDHRKRR KLDKSSASVI YKSDKDDADV DPPKFDCLDL ELRLGGRPKV Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124168229superman protein
2l1o_A1e-124168229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839359.11e-170zinc finger protein 10-like
SwissprotO809421e-26ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A0K9RC361e-170A0A0K9RC36_SPIOL; Uncharacterized protein
STRINGXP_010678076.18e-61(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10