PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_089920_nacf.t1
Common NameSOVF_089920
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 505aa    MW: 57698.3 Da    PI: 7.1875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_089920_nacf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-13441221494
                        T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        ++l lp +f++++ g+++++    ++e+  + + W+v++  +  +gr+++++GW +Fv+a+ L +g f++F+++++s f+ ++
  Sp_089920_nacf.t1  44 KQLQLPEEFTANMnGYVPHR---FIIESgMTRKCWRVEVE-KDEDGRMYFRDGWADFVEAHSLGVGNFLLFEYEEQSIFQARI 122
                        34667777765445666544...45555345599*****4.44445589************************9878775554 PP
2B338.52e-122243011494
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         +l++pk    +++++++   +l+++d +g+ W+v+l + +++gr +l  GWkeF k+n++  gD v F++++++  +++v
  Sp_089920_nacf.t1 224 YQLTIPKIVSLKMKLPSRD--DLKFQDAEGKCWTVTLGH-RRDGRAILCHGWKEFMKENKISHGDKVQFEFVSDELVRFHV 301
                        4689999999899888544..8***************55.5555677888********************98765554444 PP
3B3361.2e-113564271286
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        +++ l++pk+ +++ ++k++e   ++l+d++g+ W +++  + +++r+v ++GW eF k  g+  gD + Fk+ +
  Sp_089920_nacf.t1 356 NRSYLYMPKSVVRAQNMKNKE--SVVLRDPEGKCWPLEV-KKITGDRIVVARGWAEFWKGYGISNGDLLEFKFAS 427
                        556799******999777555..5***************.4667777************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1728128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-1828128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.42131126IPR003340B3 DNA binding domain
CDDcd100177.75E-1333123No hitNo description
SMARTSM010193.6E-834126IPR003340B3 DNA binding domain
PfamPF023622.2E-1044121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-17204304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-15204303IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-9210302No hitNo description
PROSITE profilePS5086312.294211305IPR003340B3 DNA binding domain
SMARTSM010191.1E-4211305IPR003340B3 DNA binding domain
PfamPF023625.9E-10225297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-13344435IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562345439IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-14346435IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021347439IPR003340B3 DNA binding domain
CDDcd100171.31E-8356425No hitNo description
PfamPF023626.8E-9357427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MESDGSHKQL NKPSSVTRSE MGNKPKHSSN KASFIKVLGR DFAKQLQLPE EFTANMNGYV  60
PHRFIIESGM TRKCWRVEVE KDEDGRMYFR DGWADFVEAH SLGVGNFLLF EYEEQSIFQA  120
RIYGRNGCER TITADNNKGG QSQPPKPIDV DDGEESEALE YEPVLEKCHR KKPSRLAPRK  180
YGRGIYKKKL GVPRPYRRTA QVSLSEKNLS FSIIIHYSKN HQFYQLTIPK IVSLKMKLPS  240
RDDLKFQDAE GKCWTVTLGH RRDGRAILCH GWKEFMKENK ISHGDKVQFE FVSDELVRFH  300
VTKASEADKH QSDEETGSLN MDSKHNDKPI EARMSAKKNS SESGTSFSLI WKEACNRSYL  360
YMPKSVVRAQ NMKNKESVVL RDPEGKCWPL EVKKITGDRI VVARGWAEFW KGYGISNGDL  420
LEFKFASEYL IHLNIKPSTM TPLEPDVEDA VVCYNEEALA IEPGAVITRE EFDAAIQPTE  480
EAVVMQEEFA AATTTNQPEV NDIIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864715.10.0B3 domain-containing protein REM10-like
TrEMBLA0A0K9RBF70.0A0A0K9RBF7_SPIOL; Uncharacterized protein
STRINGXP_010666269.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-20B3 family protein