PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_090510_fysy.t1

Common Name

SOVF_090510

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

G2-like

Protein Properties

Length: 257aa MW: 28468.8 Da PI: 5.4154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_090510_fysy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.6e-34	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sp_090510_fysy.t1 18 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.442	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-18	16	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-33	16	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-26	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-10	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-23	104	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDPVNGNNLS NNHSMSSKQR LRWTNELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI 60 YHVKSHLQKY RLAKYLPDSL SEGEKTDKKE SADLLYGLES SSGMQITEAL KLQMEVQKRL 120 HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGTLAKMPG SGDSGSGSLM CPEPTKSDPA 180 TPAPTSESPL GKNSRECAVS KNPSLDDESF SSQHEPLTPD SICLDATTCE NLIEETVRNP 240 CLTNDEAFSN QYSSSEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861323.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-107	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0K9R9S3	0.0	A0A0K9R9S3_SPIOL; Uncharacterized protein
STRING	XP_010686602.1	1e-146	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-94	G2-like family protein