PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_091120_fxjm.t1
Common NameSOVF_091120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 216aa    MW: 25043.4 Da    PI: 9.4752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_091120_fxjm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15120215198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                        f++++ p +v  + +l +  ++a+++   +  +s +++l+ ++g+ ++v l    ++ +  +t+GWk+Fv +ngL++gD ++F+l++r  + 
  Sp_091120_fxjm.t1 120 FKTIMYPTHVRYRYNLGVNFSHASTYfARD--KSDKVILKGPNGKNYRVGL--YLNQTTAKFTDGWKDFVVDNGLNVGDGCMFELVKRpPNN 207
                        778888999999989999999999996433..5669***************..555556779************************998999 PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                         + v++fr
  Sp_091120_fxjm.t1 208 VYQVSIFR 215
                        99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-19113215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-19113215IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-19118215No hitNo description
PROSITE profilePS5086312.52120216IPR003340B3 DNA binding domain
SMARTSM010194.1E-7120212IPR003340B3 DNA binding domain
PfamPF023624.4E-13120215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLMEFYSLGY GHFLVFRFDG CLPSQFHVLI FNKTATEIDY PLRRTPPLNS NRKLKKEYRT  60
QEANDDDDDE SVINNLDSSD SDNNVKCSSI KEKGYDRISP EARKNLKKKL SVIKSEYPNF  120
KTIMYPTHVR YRYNLGVNFS HASTYFARDK SDKVILKGPN GKNYRVGLYL NQTTAKFTDG  180
WKDFVVDNGL NVGDGCMFEL VKRPPNNVYQ VSIFRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724739.11e-69B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0K9RB301e-159A0A0K9RB30_SPIOL; Uncharacterized protein
STRINGXP_010667920.18e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-07B3 family protein