PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_091750_tsha.t1

Common Name

SOVF_091750

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 415aa MW: 47638.9 Da PI: 6.6479

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_091750_tsha.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.4	1.4e-26	82	156	2	76
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W ++e++ Li +rr+m+ ++++k++k+lWe++s+kmr+rgf rsp++C++kw+nl k++kk k+++ ++++++ Sp_091750_tsha.t1 82 WVQDETRNLISFRRDMDALFNTSKSNKHLWEQISAKMRDRGFDRSPTMCTDKWRNLLKEFKKAKQQNVNGSNGNG 156 *******************************************************************99965443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.304	74	138	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.3E-4	74	143	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-5	78	140	IPR001005	SANT/Myb domain
CDD	cd12203	2.30E-29	80	145	No hit	No description
Pfam	PF13837	1.7E-18	81	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYISDTNHHP ATTNPIAKPP SSSLEFSDDD HHHDMMIEVV PTHHHHHQQQ QQQQHQHHEP 60 HRLPSMATTP STSGPKKRAE TWVQDETRNL ISFRRDMDAL FNTSKSNKHL WEQISAKMRD 120 RGFDRSPTMC TDKWRNLLKE FKKAKQQNVN GSNGNGNAKM LCYKEIEEIL RERTRSTQTS 180 NVAGYKSPNH NSDGMNHSSK DDPFLRFCDK GVDDASIPFG PIEANGRPTL NLERRLDNEG 240 HPLAITAADD VTGGGCPPSF WRDTPANGDD THAFGGRVIT VKWGDYTRRI GVDGTAEAIK 300 DVIRSAFGLR TKRAFWLEDE EQIARSLDRD MPMCIYTLHL DEGMTIKLCH YEETEHIPYA 360 GQTITHTEVK TFYTEDDYRE FMQHRGWSCL RELNGYRNID NLDDLRPDAL YRGVT

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYISDTNHHP ATTNPIAKPP SSSLEFSDDD HHHDMMIEVV PTHHHHHQQQ QQQQHQHHEP  60
HRLPSMATTP STSGPKKRAE TWVQDETRNL ISFRRDMDAL FNTSKSNKHL WEQISAKMRD  120
RGFDRSPTMC TDKWRNLLKE FKKAKQQNVN GSNGNGNAKM LCYKEIEEIL RERTRSTQTS  180
NVAGYKSPNH NSDGMNHSSK DDPFLRFCDK GVDDASIPFG PIEANGRPTL NLERRLDNEG  240
HPLAITAADD VTGGGCPPSF WRDTPANGDD THAFGGRVIT VKWGDYTRRI GVDGTAEAIK  300
DVIRSAFGLR TKRAFWLEDE EQIARSLDRD MPMCIYTLHL DEGMTIKLCH YEETEHIPYA  360
GQTITHTEVK TFYTEDDYRE FMQHRGWSCL RELNGYRNID NLDDLRPDAL YRGVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-42	76	165	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854506.1	0.0	trihelix transcription factor GT-1-like
Swissprot	Q9FX53	1e-159	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0K9RAW0	0.0	A0A0K9RAW0_SPIOL; Uncharacterized protein
STRING	XP_010682875.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-156	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]