PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_092180_xwwn.t1
Common NameSOVF_092180
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 178aa    MW: 19743 Da    PI: 4.594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_092180_xwwn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-191665255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr +k +g+Wv+eIr+p   gk++r++lg+f+t e+Aa a++ a+  l+g
  Sp_092180_xwwn.t1 16 TFRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTQEMAAIAYDVAAFHLRG 65
                       69****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-311575No hitNo description
SuperFamilySSF541713.53E-221574IPR016177DNA-binding domain
PROSITE profilePS5103222.4451673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-311674IPR001471AP2/ERF domain
SMARTSM003806.3E-381679IPR001471AP2/ERF domain
PRINTSPR003671.3E-91728IPR001471AP2/ERF domain
PfamPF008472.2E-121765IPR001471AP2/ERF domain
PRINTSPR003671.3E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEDNNSYGRR GGIASTFRGV RKRKWGKWVS EIREPGKKTR IWLGSFDTQE MAAIAYDVAA  60
FHLRGCGAHL NFPELVNELP CPATSGAEDI RRAAQSAAAS LQSRGNLQTT VQPSYSSPAR  120
VGLSPLQIQA INESPLESPQ MWSTMTDTLM LDDSFIYSND VDMNAGWEEE VPDDSLWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181777667ATERF1
3gcc_A2e-181777667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865558.11e-131ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0K9RAT41e-130A0A0K9RAT4_SPIOL; Uncharacterized protein
STRINGXP_010683050.11e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-49ERF family protein