PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_092510_ozzh.t1

Common Name

SOVF_092510

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

ZF-HD

Protein Properties

Length: 382aa MW: 41235.4 Da PI: 8.442

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_092510_ozzh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.9	9.1e-32	63	120	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v Yk+ClkNhAaslGgha+DGCgEfmp+++++ ++++lkCaACgCHRnFH re ee Sp_092510_ozzh.t1 63 TVLYKKCLKNHAASLGGHALDGCGEFMPAPTATaLDPTSLKCAACGCHRNFHWRELEE 120 799************************9999899***************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-21	64	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-26	64	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.241	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-28	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.51E-17	231	304	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	233	304	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-25	243	300	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDMTARATIA AATITTTVAG GAGLSIVPPA KSPEAESETP HRIQPSKPFS FSNGVLKRHA 60 PSTVLYKKCL KNHAASLGGH ALDGCGEFMP APTATALDPT SLKCAACGCH RNFHWRELEE 120 MVSATCAPTP VTHVIEYHPH HRHHPLPPPT SHPQTVPTVA SRGVRSPGSQ SPPPISSSYY 180 PGSAPHMLLA LSSGGVGGPE DTPTANNNPH SYPNHHHQQQ HQNHHHHGGQ QLMNSSSSQP 240 PSRKRFRTKF SQHQKDKMQE FAEKVGWKMQ KTNDDLVNGF CNEINVERGV FKVWMHNNKN 300 SFSKRSTTTT NSGGGAANCD INPINGLNHN PVDDEEDYGH LNGNGNSNSS ISINDQPHHH 360 SNHHQYNGGK SHAPTNGSSS SS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDMTARATIA AATITTTVAG GAGLSIVPPA KSPEAESETP HRIQPSKPFS FSNGVLKRHA  60
PSTVLYKKCL KNHAASLGGH ALDGCGEFMP APTATALDPT SLKCAACGCH RNFHWRELEE  120
MVSATCAPTP VTHVIEYHPH HRHHPLPPPT SHPQTVPTVA SRGVRSPGSQ SPPPISSSYY  180
PGSAPHMLLA LSSGGVGGPE DTPTANNNPH SYPNHHHQQQ HQNHHHHGGQ QLMNSSSSQP  240
PSRKRFRTKF SQHQKDKMQE FAEKVGWKMQ KTNDDLVNGF CNEINVERGV FKVWMHNNKN  300
SFSKRSTTTT NSGGGAANCD INPINGLNHN PVDDEEDYGH LNGNGNSNSS ISINDQPHHH  360
SNHHQYNGGK SHAPTNGSSS SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-18	242	301	16	75	ZF-HD homeobox family protein
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861176.1	0.0	zinc-finger homeodomain protein 9-like
TrEMBL	A0A0K9RAN8	0.0	A0A0K9RAN8_SPIOL; Uncharacterized protein
STRING	XP_010693250.1	1e-124	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	2e-49	zinc finger homeodomain 1