PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_092700_ujtc.t1
Common NameSOVF_092700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 306aa    MW: 34654.5 Da    PI: 4.9987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_092700_ujtc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-2068118155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++ ++k++g
  Sp_092700_ujtc.t1  68 TQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDKEARKIRG 118
                        58********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-3368127No hitNo description
SMARTSM003802.0E-4069132IPR001471AP2/ERF domain
PfamPF008473.5E-1269118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3269127IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2269127IPR016177DNA-binding domain
PROSITE profilePS5103223.78869126IPR001471AP2/ERF domain
PRINTSPR003672.3E-117081IPR001471AP2/ERF domain
PRINTSPR003672.3E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MCGGAILADL IPRNQGRYTS GSDFWPDAFF STSDNFTKQV SNRPTKRPLS YSSGGVQLEK  60
RPKKQRKTQY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TPEEAARAYD KEARKIRGKK  120
AKVNFPNEEE DSFTNHPQFF PAPLYQQQNQ QQFNNILQPE NQILDYPTTD YMNQNLHVSS  180
NGLALNQESS NGYSLESAYV APNLMGIATT NQMKDEVNQS SSGKVAPVSM TGERAAIVLA  240
EEREEEAESE VQKLSEELMA YENYMKFYEI PYMEGQSATV APPLCSCQEG NATLELWSFD  300
EDVPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21691281474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4777858e-56JX477785.1 Agriophyllum squarrosum clone As14 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862620.10.0ethylene-responsive transcription factor ERF073-like isoform X1
TrEMBLA0A0K9R9800.0A0A0K9R980_SPIOL; Uncharacterized protein
STRINGXP_010684330.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-38ERF family protein