PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_093050_pwuo.t1
Common NameSOVF_093050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 167aa    MW: 18132.8 Da    PI: 10.4615
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_093050_pwuo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.97e-1688148161
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                        +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++L ++l++l++e + l+ 
  Sp_093050_pwuo.t1  88 DKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVKDLENKNSELEERLSTLQNENQMLRH 148
                        689*****************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000417.7E-687103IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.1E-1588152IPR004827Basic-leucine zipper domain
PfamPF001701.2E-1489149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.64590153IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.94E-1492150No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-1792152No hitNo description
CDDcd147049.12E-1793144No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
PRINTSPR000417.7E-6105125IPR001630cAMP response element binding (CREB) protein
PRINTSPR000417.7E-6125142IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQEQATTSAT SAAANSLPSS SERSSGSALQ FDIKEGMESD DEIRRVPEMG GEPGVNSASG  60
RDTGSAAGPD RVQASGQSQR KRGRSPADKE SKRLKRLLRN RVSAQQARER KKAYLSDLET  120
RVKDLENKNS ELEERLSTLQ NENQMLRHIL KNTTSGRRGG GSNGDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-19113152342Transcription factor HY5
2oqq_B2e-19113152342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837612.11e-116transcription factor HY5
SwissprotQ9SM502e-68HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0K9R8Y51e-114A0A0K9R8Y5_SPIOL; Uncharacterized protein
STRINGXP_010670652.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-64bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]