PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_096080_jccu.t1
Common NameSOVF_096080
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 244aa    MW: 26331.4 Da    PI: 7.9218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_096080_jccu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-203786255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a+++l+g
  Sp_096080_jccu.t1 37 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDKAARQLRG 86
                       79*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-323795IPR001471AP2/ERF domain
SMARTSM003804.3E-3837100IPR001471AP2/ERF domain
PfamPF008471.3E-123786IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-223796IPR016177DNA-binding domain
PROSITE profilePS5103223.1823794IPR001471AP2/ERF domain
CDDcd000181.91E-313796No hitNo description
PRINTSPR003673.2E-103849IPR001471AP2/ERF domain
PRINTSPR003673.2E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRRGRSTAKT TALQNGSGPC DPPVMVINGG GGNTNIKFRG VRKRPWGRFA AEIRDPWKKT  60
RVWLGTFDSA EDAARAYDKA ARQLRGPKAK TNFPLSLSHH HQNDAILTHP SPFYRNDAVL  120
VDPYHHGNDG GGSSDVEMIQ RPASSGMSST VESYSASQAI RIRHAPPKVR VPAVMNAEDC  180
RSDCDSSSSV IDDVDGDIAS SSAAVGFNSV VMKQPLPFDL NLPPPDSDGC FLSFDDFSAT  240
ALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-213897363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849043.10.0ethylene-responsive transcription factor 3
SwissprotQ9SXS82e-39ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0K9R8141e-180A0A0K9R814_SPIOL; Uncharacterized protein
STRINGXP_010675777.12e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-28ethylene responsive element binding factor 3