PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_097980_epxn.t3
Common NameSOVF_097980
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 244aa    MW: 27323.8 Da    PI: 6.3808
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_097980_epxn.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like506.7e-1613412755
            G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                       AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sp_097980_epxn.t3 13 ATPKGVLRVMGVPGLTIYHVKSHLQKYRL 41
                       9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015574.6E-111342IPR006447Myb domain, plants
SuperFamilySSF466893.58E-61341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-151342IPR009057Homeodomain-like
PfamPF143794.9E-2476121IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MQSRNLVDQI VGATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPG DGTVGAKDEK  60
KVSLDGLNAD SSQGLQINEA LKMQMEVQKR LHEQLEVQRQ LQMRIEAQGK YLQKIIEEQQ  120
KLGSVLRASE ALPSSNDEEE EREKSLDSQP GGREEASTSP RKKQKLDDSS TSNVVDTLPL  180
PLPLPVHLEN SPKKAHLDQW GRSLYGCPAG FGLDLETEFK KQENSERERE QRIPSELDYP  240
GSSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860835.11e-167myb family transcription factor PHL7-like isoform X3
TrEMBLA0A0K9R7I41e-176A0A0K9R7I4_SPIOL; Uncharacterized protein
STRINGXP_010673242.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-51G2-like family protein