PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_098580_jwkj.t1
Common NameSOVF_098580
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 243aa    MW: 27171.2 Da    PI: 6.1495
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_098580_jwkj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.42.3e-29699289
                TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......k 89
                       a+k +++ ki+T++g++dRR+Rlsa++a++fFd+qd+LG+d++ ++++WL+ +ak +i++l ++s +++s+  ++ +s s+s  + +      +
  Sp_098580_jwkj.t1  6 AKKPRSNNKIYTARGPKDRRIRLSADIAIQFFDVQDRLGYDRATEAVDWLISKAKGSIDKLFDSSVQQQSKHLTHLESMSDSGVQVDflpeimS 99
                       789999**********************************************************888886663333333333111213334332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.306766IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-2512112IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRTSSAKKPR SNNKIYTARG PKDRRIRLSA DIAIQFFDVQ DRLGYDRATE AVDWLISKAK  60
GSIDKLFDSS VQQQSKHLTH LESMSDSGVQ VDFLPEIMSS RKDYGTPNFH HSCDNNNNIS  120
AYNCTMENSM FLPCIQMENI SENQGFAHPT FSSYLGLEDS SRPCFQQIEE IKGQNARMVM  180
FNSKSNSRNG EHPFISDSLP LFLQASNNDS SLCHSPTSDP ELNLCLPGNC TSAISDSGQG  240
TFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-171366154Putative transcription factor PCF6
5zkt_B2e-171366154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846008.10.0transcription factor TCP24-like
RefseqXP_021846009.10.0transcription factor TCP24-like
TrEMBLA0A0K9R7990.0A0A0K9R799_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-23TCP domain protein 10