PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_099040_fyqi.t2

Common Name

SOVF_099040

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

M-type_MADS

Protein Properties

Length: 357aa MW: 40612.1 Da PI: 6.507

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_099040_fyqi.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70	2.1e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gi+KKA EL +LCd+++ +++fs+tgk Sp_099040_fyqi.t2 9 KRLESSSNRQVTYSKRRTGIIKKARELAILCDIDIVLLMFSPTGK 53 689*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.357	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.3E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.5E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KARELAILCD IDIVLLMFSP TGKSTLFLGE 60 RSNLEQVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEDFVASS SQTAEDLANQ 120 VGLLQAQISE AHKRLSCWSN PDKIDNVEHL QQMENSLKES LNQIRLHKDN IGKHQLLSLD 180 CSNQFQNGMH MPLMMGGIQE CQPLSWLSSN ENQQMLLSEE PNFLSHRDMK CTSDASLSGY 240 SGYYGDVKIE MDNARQCENT RQECSSLNEL TNNACMGVQI GEQYPYSPYG NISLPEEKKV 300 MPDNGINFQG NPVEYQIPGH FDMPRTMYDT RPQPWVPAAL QCPIPMFNEN SYPQPNL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KARELAILCD IDIVLLMFSP TGKSTLFLGE  60
RSNLEQVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEDFVASS SQTAEDLANQ  120
VGLLQAQISE AHKRLSCWSN PDKIDNVEHL QQMENSLKES LNQIRLHKDN IGKHQLLSLD  180
CSNQFQNGMH MPLMMGGIQE CQPLSWLSSN ENQQMLLSEE PNFLSHRDMK CTSDASLSGY  240
SGYYGDVKIE MDNARQCENT RQECSSLNEL TNNACMGVQI GEQYPYSPYG NISLPEEKKV  300
MPDNGINFQG NPVEYQIPGH FDMPRTMYDT RPQPWVPAAL QCPIPMFNEN SYPQPNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-14	1	92	1	90	MEF2C
5f28_B	2e-14	1	92	1	90	MEF2C
5f28_C	2e-14	1	92	1	90	MEF2C
5f28_D	2e-14	1	92	1	90	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860464.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_021860479.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-106	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A0K9R747	0.0	A0A0K9R747_SPIOL; Uncharacterized protein
STRING	XP_010678493.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-108	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]