PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_099700_tdca.t1
Common NameSOVF_099700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 303aa    MW: 33439.9 Da    PI: 6.9189
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_099700_tdca.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15218254135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl +  k++
  Sp_099700_tdca.t1 218 CTHCGISSlsTPMMRRGPNGPRTLCNACGLVWGNKRT 254
                        *****99999**********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.6E-1177112IPR010399Tify domain
PROSITE profilePS5132014.48577112IPR010399Tify domain
PfamPF062007.5E-1280111IPR010399Tify domain
PfamPF062032.4E-15151193IPR010402CCT domain
PROSITE profilePS5101713.344151193IPR010402CCT domain
PROSITE profilePS501149.578212270IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-13212265IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12213264No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14216259IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.20E-14217267No hitNo description
PfamPF003205.3E-13218254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYPHEQHLSV SPSSPSQLQE SQALIEQNDI VQRVGDSVDD HYQHNHHHHH HGQHRCSDDG  60
PVAFEGDSIY AVDNYGRVEG SDQLTLSFRG QVYVFDSVTP DKVEAVLLVL GGNVGGSAPT  120
PASQGAEASH VAHMSQQDMM VYPGRSSLPQ REASLNRYRR KRNERTFDKL IRYNVRQEVA  180
QRQPRSKGQF TSSKKGGESS GCNAQDSGPD ETQLETSCTH CGISSLSTPM MRRGPNGPRT  240
LCNACGLVWG NKRTLRDLSK KQDPYVMPNE LTGASPFRAT DILGEAKYVN FGENDSPALI  300
AQH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854877.10.0GATA transcription factor 25
SwissprotQ9LRH64e-65GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0K9R6Z50.0A0A0K9R6Z5_SPIOL; Uncharacterized protein
STRINGXP_010671518.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-62GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]