PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_100990_zinp.t1
Common NameSOVF_100990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 224aa    MW: 24314.6 Da    PI: 8.9549
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_100990_zinp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.47.7e-1648108257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Sp_100990_zinp.t1  48 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 108
                        89*****************99*************************************997 PP
2Wus_type_Homeobox1085.5e-3547110265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Sp_100990_zinp.t1  47 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 110
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1444115IPR009057Homeodomain-like
PROSITE profilePS5007111.45144109IPR001356Homeobox domain
SMARTSM003892.3E-646113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-948113IPR009057Homeodomain-like
PfamPF000461.3E-1348108IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEDHHQATKT TSNNISTTTT TASTSSSSKG GGDRTSTSTT TSGGEPVRSR WTPKPEQILI  60
LESIFNSGMV NPPKEETVRI RKLLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQASLAAS  120
VATPTQTPPQ QPPPHPGYFD LGHHRTTSTC TIPTSSSSGV TCFAPCNSTS SSTTFCDYGG  180
GVVDDVFGNY SGQMDLVNST NHQMDHRSSN SSNIDFQSGK LNLT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853045.11e-161WUSCHEL-related homeobox 11-like
TrEMBLA0A0K9R6J51e-164A0A0K9R6J5_SPIOL; Uncharacterized protein
STRINGXP_010677789.13e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-35WUSCHEL related homeobox 11