PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_101030_adka.t1
Common NameSOVF_101030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family BBR-BPC
Protein Properties Length: 241aa    MW: 27646.6 Da    PI: 9.3526
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_101030_adka.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind354.6e-111110119105
          GAGA_bind  19 slkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgt 105
                        + +  ++ +l+ +iaerda+i+e + al ekk a+ er++a  qr+ a  er++a++er+n+++    +  s +    +  p+++++ls++
  Sp_101030_adka.t1  11 QTALIMNRNLVNMIAERDAAIEEMKRALLEKKRAFEEREIAISQRNFAYRERDEAIMERNNAYALQNCILSSGVecdnNYVPQEINALSES 101
                        33445899******************************************************98776665555445545556666666555 PP
2GAGA_bind239.52.5e-73100241156301
          GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
                        ++++k+++ kk+k+     +k  +k ++d  ++k+e++  +++ln v++D+s +P P CsCtG+ rqCYkWGnGGWqSaCCttt+SvyPLP 
  Sp_101030_adka.t1 100 ESNNKSPQPKKTKE-----RKPREKRTCDeLKVKKEWDGKKMGLNRVDYDDSVMPSPGCSCTGVFRQCYKWGNGGWQSACCTTTVSVYPLPP 186
                        23333333333333.....2223333333378************************************************************ PP

          GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        ++++r aRi+grKmS +af+klL+ La eG+dls pvDLk+ W kHGtn+++ti+
  Sp_101030_adka.t1 187 VPNKRYARIGGRKMSASAFSKLLSELAMEGFDLSVPVDLKNRWSKHGTNRYITIK 241
                        ******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.4E-802241IPR010409GAGA-binding transcriptional activator
PfamPF062178.5E-70101241IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMAYQHEVKE QTALIMNRNL VNMIAERDAA IEEMKRALLE KKRAFEEREI AISQRNFAYR  60
ERDEAIMERN NAYALQNCIL SSGVECDNNY VPQEINALSE SNNKSPQPKK TKERKPREKR  120
TCDELKVKKE WDGKKMGLNR VDYDDSVMPS PGCSCTGVFR QCYKWGNGGW QSACCTTTVS  180
VYPLPPVPNK RYARIGGRKM SASAFSKLLS ELAMEGFDLS VPVDLKNRWS KHGTNRYITI  240
K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852931.10.0protein BASIC PENTACYSTEINE4-like isoform X2
SwissprotQ8S8C61e-78BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0K9R6K00.0A0A0K9R6K0_SPIOL; Uncharacterized protein
STRINGXP_010667727.11e-118(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.26e-79basic pentacysteine 4