PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_102430_hnfa.t1
Common NameSOVF_102430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 274aa    MW: 31289.8 Da    PI: 5.4908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_102430_hnfa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19126176255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrd ++   + +r++lg+f taeeAa a+++a+++++g
  Sp_102430_hnfa.t1 126 HYRGVRRRP-WGKYAAEIRDSTK---KgARVWLGTFNTAEEAALAYDKAALRIRG 176
                        7********.**********433...34************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-30125186IPR001471AP2/ERF domain
PfamPF008477.5E-14126176IPR001471AP2/ERF domain
SMARTSM003803.7E-35126191IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21126186IPR016177DNA-binding domain
PROSITE profilePS5103223.367126185IPR001471AP2/ERF domain
CDDcd000189.69E-29126185No hitNo description
PRINTSPR003675.2E-11127138IPR001471AP2/ERF domain
PRINTSPR003675.2E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTIIKKEEHK PPEEAILESI WANYIGAPKS QEEAWNTPGI FQDWIGIPSL EEQDEASNAL  60
KRLPSLGRWV SMGSETWEGL LNGNIGYSTT NPSETCYLED KKNNEWERNN SRENVEKTNT  120
NIPIRHYRGV RRRPWGKYAA EIRDSTKKGA RVWLGTFNTA EEAALAYDKA ALRIRGVAKA  180
SLNFPLEAVI KAIGSQYENN HCNNTPKKRE GKDHNNYWES QSDYYVNEFM IEQPSFKRSR  240
FSMENNILGG AQHGVLELED LGSDILENLL SSTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26125186161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863580.10.0ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0K9R6460.0A0A0K9R646_SPIOL; Uncharacterized protein
STRINGXP_010686478.11e-102(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.15e-34ERF family protein