PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_102780_gerg.t1

Common Name

SOVF_102780

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

M-type_MADS

Protein Properties

Length: 87aa MW: 9908.37 Da PI: 10.2992

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_102780_gerg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.7	2.3e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvt+skRrngi+KKA E+ vLCd v+v+if+++gk++ y Sp_102780_gerg.t1 9 KRIENSTNRQVTYSKRRNGIIKKATEINVLCDSMVSVVIFANNGKMHAYN 58 79*********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.347	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-34	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-33	2	85	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.05E-37	2	80	No hit	No description
PRINTS	PR00404	2.0E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGIIK KATEINVLCD SMVSVVIFAN NGKMHAYNSP 60 STPVEDILEK YQNISGKRLW DAKHEVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-17	1	75	1	73	MEF2 CHIMERA
6byy_B	5e-17	1	75	1	73	MEF2 CHIMERA
6byy_C	5e-17	1	75	1	73	MEF2 CHIMERA
6byy_D	5e-17	1	75	1	73	MEF2 CHIMERA
6bz1_A	5e-17	1	75	1	73	MEF2 CHIMERA
6bz1_B	5e-17	1	75	1	73	MEF2 CHIMERA
6bz1_C	5e-17	1	75	1	73	MEF2 CHIMERA
6bz1_D	5e-17	1	75	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY604515	1e-141	AY604515.1 Spinacia oleracea PISTILLATA (PI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021867011.1	2e-56	floral homeotic protein PMADS 2-like
Swissprot	Q07474	4e-43	MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBL	A0A0K9R5Z7	1e-57	A0A0K9R5Z7_SPIOL; Uncharacterized protein
STRING	XP_010677661.1	1e-47	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	6e-39	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]