PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_103010_ortt.t1
Common NameSOVF_103010
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 313aa    MW: 34049.8 Da    PI: 4.8263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_103010_ortt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-182372255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a ++++g
  Sp_103010_ortt.t1 23 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRASRSMRG 72
                       577******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-322386IPR001471AP2/ERF domain
CDDcd000188.61E-292379No hitNo description
Gene3DG3DSA:3.30.730.102.5E-282380IPR001471AP2/ERF domain
PROSITE profilePS5103219.9682380IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-202481IPR016177DNA-binding domain
PRINTSPR003674.2E-82435IPR001471AP2/ERF domain
PfamPF008473.2E-112672IPR001471AP2/ERF domain
PRINTSPR003674.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSKTKSTKTT SPQQQDVGNP PIKFLGVRRR PWGRYAAEIR DPSTKERHWL GTFDTAEEAA  60
LAYDRASRSM RGPRCRTNFV YSDMPHGSSV TSILSPDNQN QHQNQNQNQN HHQNQPEFSL  120
SPGNDYDYKA VSNAQVWSSS SSSSYQENPT IFTYNNGADD SVINTNYSNN NCFYANSNDI  180
ELPPLPDQFT GELAQLSWPS PAVGGNSSEY LGLDSNNAGY VYADVPPFAR IAYHGDLQGL  240
VRTFASQGET PQVIDVDADP SKLTADPPNS TQIMFGSIPA TISMDTKASG SANAKDTNPA  300
DGSKGAGTSS TNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-182479359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-181779871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857167.11e-132ethylene-responsive transcription factor LEP
TrEMBLA0A0K9R5Y40.0A0A0K9R5Y4_SPIOL; Uncharacterized protein
STRINGXP_010682226.13e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-42ERF family protein