PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_104320_safu.t1

Common Name

SOVF_104320

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

ERF

Protein Properties

Length: 191aa MW: 21767.4 Da PI: 6.6272

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_104320_safu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.1	2.8e-20	9	59	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f tae+Aa a+++a+ kl+ge Sp_104320_safu.t1 9 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDKAAYKLRGE 59 59****9.******965...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.61E-34	8	68	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.3E-32	9	67	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-37	9	72	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.117	9	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-23	9	67	IPR016177	DNA-binding domain
Pfam	PF00847	6.2E-14	10	59	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	10	21	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	32	48	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKQNKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFE TAEQAALAYD KAAYKLRGEF 60 ARLNFPHLKH HGAHVTTQFG NYKPLHSSVN AKLDAICQSL EISSEQEKTE HPCFSSVSLS 120 DSYPLIENVP STAEILVPKS EILPISEDSS TTSCLPESGF TFFDFTESSW DDSYSFSLDK 180 FPSFEIDWAS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-23	8	66	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855265.1	1e-141	ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	9e-66	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A0K9R741	1e-140	A0A0K9R741_SPIOL; Uncharacterized protein
STRING	XP_010680571.1	1e-103	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	2e-57	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]