PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_104410_qony.t1

Common Name

SOVF_104410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 446aa MW: 50266.8 Da PI: 6.1026

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_104410_qony.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	234	6.5e-72	55	389	25	343
GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfshltaNqaIleavege.. 109 ++++ +s +gd+ qR+aayf+ +L+arl+ + s y + ++ ++ +ee++a++ ++ vsP+++f+h+taNqaIlea+ege Sp_104410_qony.t1 55 MKIEQKSSVTGDSGQRVAAYFADGLSARLLTQKSAFYYTQKSAFYYNMVmnkptPAEEFMAFTHLNRVSPFYQFAHFTANQAILEAFEGEee 146 579999**********************9888777655443332222445668999999999*********************955 PP GRAS 110 ...ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledlele 192 ++H+iD+d+s+G+QWp+L+q+L++ + + sl iTg+++ s eel t++rL +f + + ++ fef+ l l+ +l+ Sp_104410_qony.t1 147 tnnWCLHVIDYDVSHGFQWPSLMQSLSEMAandanHRVVSLCITGLAK----SLEELIGTENRLVSFSKIFhNIAFEFHGL----LKGSKLK 230 444456*****************888544322244899**....9************8758***8....7778889 PP GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsleaklpr 277 +L+ ++ +E+laVnlv++l +l ++ + ++e++ ++ sl+P vvv+ve+e +h ++ + l +++l+yy+a+fdsl+ lp Sp_104410_qony.t1 231 NLERRNnNETLAVNLVFHLSSLN-NTSN----ISETMTVIHSLNPSVVVLVEREGSHHQKtsssscRILSNYVDSLHYYAAMFDSLDDCLPL 317 9988877******999997.3333....4579**************9995555778888999****************** PP GRAS 278 eseerikvErellgreivnv.vacegaerre.....rhetlekWrerleeaGFkpvplsekaakqaklllrk 343 es er ++E+ lgrei+++ +ac +++ e + e +e+W+er++ GF+ + ls+k++ qakll+++ Sp_104410_qony.t1 318 ESAERLSIEKNHLGREIKDLiIACDEDDDDEvkclsKFEVMETWKERMMCHGFEGIVLSSKVTIQAKLLMKM 389 **************96268888876653333356999*************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.41	1	400	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-69	55	389	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MNEDVLSLSL STVSHSTHVE RRINNSHLLI NSDDNWELKI FRLFEERQRM LNMNMKIEQK 60 SSVTGDSGQR VAAYFADGLS ARLLTQKSAF YYTQKSAFYY NMVMNKPTPA EEFMAFTHLN 120 RVSPFYQFAH FTANQAILEA FEGEEETNNW CLHVIDYDVS HGFQWPSLMQ SLSEMAANDA 180 NHRVVSLCIT GLAKSLEELI GTENRLVSFS KIFHNIAFEF HGLLKGSKLK NLERRNNNET 240 LAVNLVFHLS SLNNTSNISE TMTVIHSLNP SVVVLVEREG SHHQKTSSSS CRILSNYVDS 300 LHYYAAMFDS LDDCLPLESA ERLSIEKNHL GREIKDLIIA CDEDDDDEVK CLSKFEVMET 360 WKERMMCHGF EGIVLSSKVT IQAKLLMKMG CHYHPRFEGG DAGGGSGGGG GGGGGGFRVY 420 ERDCGMGISL GWQDRFLITA SAWRCI

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MNEDVLSLSL STVSHSTHVE RRINNSHLLI NSDDNWELKI FRLFEERQRM LNMNMKIEQK  60
SSVTGDSGQR VAAYFADGLS ARLLTQKSAF YYTQKSAFYY NMVMNKPTPA EEFMAFTHLN  120
RVSPFYQFAH FTANQAILEA FEGEEETNNW CLHVIDYDVS HGFQWPSLMQ SLSEMAANDA  180
NHRVVSLCIT GLAKSLEELI GTENRLVSFS KIFHNIAFEF HGLLKGSKLK NLERRNNNET  240
LAVNLVFHLS SLNNTSNISE TMTVIHSLNP SVVVLVEREG SHHQKTSSSS CRILSNYVDS  300
LHYYAAMFDS LDDCLPLESA ERLSIEKNHL GREIKDLIIA CDEDDDDEVK CLSKFEVMET  360
WKERMMCHGF EGIVLSSKVT IQAKLLMKMG CHYHPRFEGG DAGGGSGGGG GGGGGGFRVY  420
ERDCGMGISL GWQDRFLITA SAWRCI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-51	44	443	35	378	Protein SCARECROW
5b3h_A	4e-51	44	443	34	377	Protein SCARECROW
5b3h_D	4e-51	44	443	34	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849549.1	0.0	protein SCARECROW-like isoform X2
TrEMBL	A0A0K9R7F1	0.0	A0A0K9R7F1_SPIOL; Uncharacterized protein
STRING	XP_010675505.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-49	GRAS family protein