PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_104440_ptru.t1

Common Name

SOVF_104440

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 508aa MW: 56994.8 Da PI: 6.4631

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_104440_ptru.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.4e-07	262	283	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Sp_104440_ptru.t1 262 FCTICGKGFKRDANLRMHMRGH 283 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.32E-5	259	286	No hit	No description
PROSITE profile	PS50157	12.03	261	288	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	261	283	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.2E-6	262	312	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	263	283	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	310	343	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	36	348	370	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MNVKDMPNSE AWNEVQQNAS LNNQPFNNFT SREQSKWEDP SILDYSMRIN SSFSKFNQPS 60 QNSTKIPKQD GTQTQMPDVS NFDPRATLNN LSFLEQKIHQ LQELVHMIVG RKAQVQGNQD 120 ELILQQQQLI TADLTSIIVQ LISAAGSLLP SMKHNLSASA TTSSGLFLQQ QVKQAATTSS 180 GLFLQQQVKQ AVVEEVKPVE QQSTQMDSVT NSVTEMSSNN NMEEDHELKD EDDGKEEEHL 240 PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKEA 300 SSEKVLLKRY SCPSIGCKRN KEHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCHTKKFSV 360 IADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHIGLFQGH TPAIPSEEQH KGTTTSVQSN 420 LSENCEMTNM GFGFGSSNGA NNENVAQLMM DGKVNVDDPF FSLLNYEYSL GGLQDFPLTN 480 FDDSPSSFSF LNSEEKDGMM CGSSNDVH

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MNVKDMPNSE AWNEVQQNAS LNNQPFNNFT SREQSKWEDP SILDYSMRIN SSFSKFNQPS  60
QNSTKIPKQD GTQTQMPDVS NFDPRATLNN LSFLEQKIHQ LQELVHMIVG RKAQVQGNQD  120
ELILQQQQLI TADLTSIIVQ LISAAGSLLP SMKHNLSASA TTSSGLFLQQ QVKQAATTSS  180
GLFLQQQVKQ AVVEEVKPVE QQSTQMDSVT NSVTEMSSNN NMEEDHELKD EDDGKEEEHL  240
PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKEA  300
SSEKVLLKRY SCPSIGCKRN KEHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCHTKKFSV  360
IADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHIGLFQGH TPAIPSEEQH KGTTTSVQSN  420
LSENCEMTNM GFGFGSSNGA NNENVAQLMM DGKVNVDDPF FSLLNYEYSL GGLQDFPLTN  480
FDDSPSSFSF LNSEEKDGMM CGSSNDVH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849735.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_021849795.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A0K9R5A3	0.0	A0A0K9R5A3_SPIOL; Uncharacterized protein
STRING	XP_010676478.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-164	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]