PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107060_rtie.t1
Common NameSOVF_107060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 228aa    MW: 26447.5 Da    PI: 10.3991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107060_rtie.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-133771796
                       E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                       ++pk f+e+   g+k+ es+ lt   +  r W vk+  ++++    +++GW+eF++  gLk+gDf+vF ++ +    + v+v
  Sp_107060_rtie.t1  3 SIPKAFLEKElkGYKPIESVVLTTDYQPHRHWLVKV--EGGR---AFKEGWNEFCSHYGLKAGDFLVFAHQLN--LMFQVSV 77
                       7******9999888888886666666777*******..6665...589*********************6543..3335555 PP
2B355.21.3e-17140217987
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        ++++s +++lpk f++e g+++++   ++l   +g+ Wevkl+yrk++++ ++++GWkeF  an L+ +D++ F+l +r
  Sp_107060_rtie.t1 140 YAFTSTNVYLPKWFVRESGLENRCC-VIKLIGGEGKAWEVKLRYRKYDSQAFIKGGWKEFQAANSLRPRDIICFQLLER 217
                        6788889***********9998775.9************************************************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.421181IPR003340B3 DNA binding domain
SMARTSM010190.07181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-12280IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-11379No hitNo description
SuperFamilySSF1019363.92E-11379IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-9371IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-15130222IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308132228IPR003340B3 DNA binding domain
SMARTSM010192.4E-9139228IPR003340B3 DNA binding domain
PfamPF023621.8E-14140217IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14143222IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-17148218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQSIPKAFLE KELKGYKPIE SVVLTTDYQP HRHWLVKVEG GRAFKEGWNE FCSHYGLKAG  60
DFLVFAHQLN LMFQVSVFDP LTACHRSFSS SNHIIGSNTK RRGSKKLRSS YEISGKRRSS  120
KANPSVKDQQ LSCRITLSFY AFTSTNVYLP KWFVRESGLE NRCCVIKLIG GEGKAWEVKL  180
RYRKYDSQAF IKGGWKEFQA ANSLRPRDII CFQLLERGRW PIMNCYRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693056.14e-81PREDICTED: uncharacterized protein LOC104906051
TrEMBLA0A0K9R6S21e-170A0A0K9R6S2_SPIOL; Uncharacterized protein
STRINGXP_010693056.12e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.19e-24B3 family protein