PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107360_xjej.t1
Common NameSOVF_107360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 396aa    MW: 43466.7 Da    PI: 6.555
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107360_xjej.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.25.4e-106133802374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 
                         +lLl+cA+++s+g+l+ a  lL ++ el+sp g+p  R+aa+f+  L++ l+    s   + +++ + s ++  +  +al+ ++ ++P++k
  Sp_107360_xjej.t1  13 LTLLLKCADHISAGNLTSAGDLLPEIFELSSPFGSPADRVAAFFAHSLHSYLLLhFLSPPPQPVKMLTLS-SQLRSFHSALQSYNSLTPFVK 103
                        579***********************************************99982223333333333333.346666678888********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        fsh+taNqaI ea+eg++ vH+iD+di+qGlQWp L++ LasRp++  s+R+Tg+g+    s++ l++tg rLa+fA++lg+pf+f+++  k
  Sp_107360_xjej.t1 104 FSHFTANQAIFEALEGHDGVHVIDLDIMQGLQWPGLFHILASRPRKVNSVRVTGFGP----SSDLLSQTGARLAEFAASLGLPFRFTPIEGK 191
                        *********************************************************....9**************************9544 PP

               GRAS 185 ..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
                          +l++ +l++L+   +E+++V++++  h+l+d s+s       +L++++ ++P++v++veq++d  +++sF+erf+eal+yysalfd+l +
  Sp_107360_xjej.t1 192 igNLSESQLSQLAAVANEVTVVHCMH--HNLYDISGSHVG----TLRVLNAVRPRLVTMVEQDIDVsQTTSFMERFVEALHYYSALFDALGE 277
                        45999999******************..9**999999999....**********************8999********************** PP

               GRAS 274 klpreseerikvErellgreivnvvace.gaerrer.hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +l+++s +r++vE++l+g ei+n++a   g++r++       +W + l ++GF+p +ls + a+qa+lll++++++gy++ ee+g+l lgWk
  Sp_107360_xjej.t1 278 GLGKDSVQRHVVEQQLFGSEIRNILAVGhGRKRINGdDGIITRWGDELIRVGFEPFSLSGSPAAQASLLLEMFPWKGYTMMEENGCLRLGWK 369
                        *************************986155566641455799************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        d pL+++SaW+
  Sp_107360_xjej.t1 370 DLPLLTASAWQ 380
                        **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.6991360IPR005202Transcription factor GRAS
PfamPF035141.9E-10313380IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLTTAPTTSL HLLTLLLKCA DHISAGNLTS AGDLLPEIFE LSSPFGSPAD RVAAFFAHSL  60
HSYLLLHFLS PPPQPVKMLT LSSQLRSFHS ALQSYNSLTP FVKFSHFTAN QAIFEALEGH  120
DGVHVIDLDI MQGLQWPGLF HILASRPRKV NSVRVTGFGP SSDLLSQTGA RLAEFAASLG  180
LPFRFTPIEG KIGNLSESQL SQLAAVANEV TVVHCMHHNL YDISGSHVGT LRVLNAVRPR  240
LVTMVEQDID VSQTTSFMER FVEALHYYSA LFDALGEGLG KDSVQRHVVE QQLFGSEIRN  300
ILAVGHGRKR INGDDGIITR WGDELIRVGF EPFSLSGSPA AQASLLLEMF PWKGYTMMEE  360
NGCLRLGWKD LPLLTASAWQ PCDYSCVTSN GNILRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1191838125380Protein SCARECROW
5b3h_A1e-1191838124379Protein SCARECROW
5b3h_D1e-1191838124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855794.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-150SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0K9R6860.0A0A0K9R686_SPIOL; Uncharacterized protein
STRINGXP_010669360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-142GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]